Strain Fitness in Rahnella sp. WP5 around EX31_RS10530

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10525 and EX31_RS10530 are separated by 114 nucleotidesEX31_RS10530 and EX31_RS10535 are separated by 744 nucleotides EX31_RS10525: EX31_RS10525 - AI-2E family transporter, at 19,170 to 20,279 _RS10525 EX31_RS10530: EX31_RS10530 - anti-adapter protein IraP, at 20,394 to 20,735 _RS10530 EX31_RS10535: EX31_RS10535 - GtrA family protein, at 21,480 to 21,839 _RS10535 Position (kb) 20 21Strain fitness (log2 ratio) -2 -1 0 1 2at 19.408 kb on + strand, within EX31_RS10525at 19.408 kb on + strand, within EX31_RS10525at 19.409 kb on - strand, within EX31_RS10525at 19.599 kb on - strand, within EX31_RS10525at 19.599 kb on - strand, within EX31_RS10525at 19.605 kb on + strand, within EX31_RS10525at 19.630 kb on + strand, within EX31_RS10525at 19.630 kb on + strand, within EX31_RS10525at 19.631 kb on - strand, within EX31_RS10525at 19.631 kb on - strand, within EX31_RS10525at 19.634 kb on + strand, within EX31_RS10525at 19.634 kb on + strand, within EX31_RS10525at 19.635 kb on - strand, within EX31_RS10525at 19.635 kb on - strand, within EX31_RS10525at 19.635 kb on - strand, within EX31_RS10525at 19.635 kb on - strand, within EX31_RS10525at 19.677 kb on + strand, within EX31_RS10525at 19.677 kb on + strand, within EX31_RS10525at 19.677 kb on + strand, within EX31_RS10525at 19.677 kb on + strand, within EX31_RS10525at 19.678 kb on - strand, within EX31_RS10525at 19.678 kb on - strand, within EX31_RS10525at 19.678 kb on - strand, within EX31_RS10525at 19.752 kb on + strand, within EX31_RS10525at 19.756 kb on + strand, within EX31_RS10525at 19.756 kb on + strand, within EX31_RS10525at 19.757 kb on - strand, within EX31_RS10525at 19.757 kb on - strand, within EX31_RS10525at 19.772 kb on + strand, within EX31_RS10525at 19.804 kb on + strand, within EX31_RS10525at 19.804 kb on + strand, within EX31_RS10525at 19.831 kb on + strand, within EX31_RS10525at 19.860 kb on + strand, within EX31_RS10525at 19.943 kb on + strand, within EX31_RS10525at 19.943 kb on + strand, within EX31_RS10525at 20.003 kb on + strand, within EX31_RS10525at 20.050 kb on + strand, within EX31_RS10525at 20.051 kb on - strand, within EX31_RS10525at 20.131 kb on - strand, within EX31_RS10525at 20.131 kb on - strand, within EX31_RS10525at 20.131 kb on - strand, within EX31_RS10525at 20.320 kb on + strandat 20.320 kb on + strandat 20.321 kb on - strandat 20.321 kb on - strandat 20.355 kb on + strandat 20.355 kb on + strandat 20.356 kb on - strandat 20.356 kb on - strandat 20.356 kb on - strandat 20.365 kb on + strandat 20.365 kb on + strandat 20.365 kb on + strandat 20.365 kb on + strandat 20.365 kb on + strandat 20.366 kb on - strandat 20.369 kb on + strandat 20.403 kb on - strandat 20.410 kb on + strandat 20.410 kb on + strandat 20.410 kb on + strandat 20.410 kb on + strandat 20.410 kb on + strandat 20.411 kb on - strandat 20.459 kb on + strand, within EX31_RS10530at 20.460 kb on - strand, within EX31_RS10530at 20.498 kb on + strand, within EX31_RS10530at 20.598 kb on - strand, within EX31_RS10530at 20.598 kb on - strand, within EX31_RS10530at 20.598 kb on - strand, within EX31_RS10530at 20.598 kb on - strand, within EX31_RS10530at 20.609 kb on + strand, within EX31_RS10530at 20.733 kb on + strandat 20.738 kb on + strandat 20.738 kb on + strandat 20.751 kb on + strandat 20.831 kb on - strandat 20.831 kb on - strandat 20.880 kb on - strandat 20.899 kb on + strandat 20.934 kb on + strandat 21.127 kb on + strandat 21.183 kb on + strandat 21.183 kb on + strandat 21.184 kb on - strandat 21.184 kb on - strandat 21.223 kb on - strandat 21.225 kb on - strandat 21.225 kb on - strandat 21.225 kb on - strandat 21.225 kb on - strandat 21.225 kb on - strandat 21.225 kb on - strandat 21.253 kb on + strandat 21.254 kb on - strandat 21.256 kb on - strandat 21.256 kb on - strandat 21.256 kb on - strandat 21.256 kb on - strandat 21.256 kb on - strandat 21.283 kb on - strandat 21.320 kb on + strandat 21.320 kb on + strandat 21.321 kb on - strandat 21.321 kb on - strandat 21.321 kb on - strandat 21.321 kb on - strandat 21.321 kb on - strandat 21.397 kb on - strandat 21.430 kb on + strandat 21.431 kb on - strandat 21.431 kb on - strandat 21.473 kb on + strandat 21.475 kb on + strandat 21.475 kb on + strandat 21.510 kb on - strandat 21.556 kb on + strand, within EX31_RS10535at 21.666 kb on - strand, within EX31_RS10535

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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19,408 + EX31_RS10525 0.21 +0.4
19,408 + EX31_RS10525 0.21 +0.7
19,409 - EX31_RS10525 0.22 +2.1
19,599 - EX31_RS10525 0.39 +0.9
19,599 - EX31_RS10525 0.39 -0.9
19,605 + EX31_RS10525 0.39 +0.1
19,630 + EX31_RS10525 0.41 +0.8
19,630 + EX31_RS10525 0.41 +0.3
19,631 - EX31_RS10525 0.42 -0.9
19,631 - EX31_RS10525 0.42 +0.5
19,634 + EX31_RS10525 0.42 -0.0
19,634 + EX31_RS10525 0.42 -2.1
19,635 - EX31_RS10525 0.42 +0.1
19,635 - EX31_RS10525 0.42 -0.6
19,635 - EX31_RS10525 0.42 -1.1
19,635 - EX31_RS10525 0.42 -1.4
19,677 + EX31_RS10525 0.46 +0.8
19,677 + EX31_RS10525 0.46 +0.6
19,677 + EX31_RS10525 0.46 +1.1
19,677 + EX31_RS10525 0.46 +0.2
19,678 - EX31_RS10525 0.46 +1.1
19,678 - EX31_RS10525 0.46 +2.5
19,678 - EX31_RS10525 0.46 +1.5
19,752 + EX31_RS10525 0.52 -0.1
19,756 + EX31_RS10525 0.53 +0.7
19,756 + EX31_RS10525 0.53 -1.2
19,757 - EX31_RS10525 0.53 +0.1
19,757 - EX31_RS10525 0.53 +0.7
19,772 + EX31_RS10525 0.54 -0.9
19,804 + EX31_RS10525 0.57 +0.0
19,804 + EX31_RS10525 0.57 +1.5
19,831 + EX31_RS10525 0.60 -0.9
19,860 + EX31_RS10525 0.62 -0.0
19,943 + EX31_RS10525 0.70 -0.7
19,943 + EX31_RS10525 0.70 +0.7
20,003 + EX31_RS10525 0.75 -0.2
20,050 + EX31_RS10525 0.79 -0.1
20,051 - EX31_RS10525 0.79 +0.6
20,131 - EX31_RS10525 0.87 -1.3
20,131 - EX31_RS10525 0.87 +1.1
20,131 - EX31_RS10525 0.87 +1.7
20,320 + -0.0
20,320 + +0.1
20,321 - +0.1
20,321 - +0.1
20,355 + +0.7
20,355 + -1.2
20,356 - +0.3
20,356 - +0.1
20,356 - +1.5
20,365 + -1.4
20,365 + -1.3
20,365 + +2.1
20,365 + -0.4
20,365 + -0.1
20,366 - +1.3
20,369 + +1.6
20,403 - +0.4
20,410 + -1.7
20,410 + -0.4
20,410 + +1.2
20,410 + -1.9
20,410 + -0.3
20,411 - +0.7
20,459 + EX31_RS10530 0.19 -1.0
20,460 - EX31_RS10530 0.19 +0.4
20,498 + EX31_RS10530 0.30 +1.1
20,598 - EX31_RS10530 0.60 -1.7
20,598 - EX31_RS10530 0.60 -1.3
20,598 - EX31_RS10530 0.60 -0.8
20,598 - EX31_RS10530 0.60 +0.5
20,609 + EX31_RS10530 0.63 +0.7
20,733 + -0.1
20,738 + -0.1
20,738 + +1.2
20,751 + +1.6
20,831 - -1.1
20,831 - +0.6
20,880 - -0.4
20,899 + -0.3
20,934 + +0.7
21,127 + +0.6
21,183 + +2.0
21,183 + -0.4
21,184 - +2.1
21,184 - +0.7
21,223 - -0.5
21,225 - -0.3
21,225 - +1.1
21,225 - +0.6
21,225 - +0.4
21,225 - -0.9
21,225 - +0.7
21,253 + +0.6
21,254 - -0.4
21,256 - -0.3
21,256 - -0.4
21,256 - +0.1
21,256 - +0.9
21,256 - -1.6
21,283 - +1.1
21,320 + +1.3
21,320 + -1.3
21,321 - -1.1
21,321 - -0.9
21,321 - +0.5
21,321 - -0.3
21,321 - +1.9
21,397 - +0.5
21,430 + -0.9
21,431 - +1.7
21,431 - -0.7
21,473 + -0.7
21,475 + -0.8
21,475 + +0.6
21,510 - -0.3
21,556 + EX31_RS10535 0.21 -0.9
21,666 - EX31_RS10535 0.52 +1.4

Or see this region's nucleotide sequence