Strain Fitness in Rahnella sp. WP5 around EX31_RS10035

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10025 and EX31_RS10030 are separated by 278 nucleotidesEX31_RS10030 and EX31_RS10035 are separated by 297 nucleotidesEX31_RS10035 and EX31_RS10040 are separated by 80 nucleotidesEX31_RS10040 and EX31_RS10045 are separated by 181 nucleotides EX31_RS10025: EX31_RS10025 - hypothetical protein, at 211,992 to 212,282 _RS10025 EX31_RS10030: EX31_RS10030 - YciY family protein, at 212,561 to 212,743 _RS10030 EX31_RS10035: EX31_RS10035 - cardiolipin synthase, at 213,041 to 214,501 _RS10035 EX31_RS10040: EX31_RS10040 - YciU family protein, at 214,582 to 214,905 _RS10040 EX31_RS10045: EX31_RS10045 - ABC transporter ATP-binding protein, at 215,087 to 216,124 _RS10045 Position (kb) 213 214 215Strain fitness (log2 ratio) -2 -1 0 1 2at 212.081 kb on - strand, within EX31_RS10025at 212.131 kb on + strand, within EX31_RS10025at 212.132 kb on - strand, within EX31_RS10025at 212.164 kb on - strand, within EX31_RS10025at 212.209 kb on - strand, within EX31_RS10025at 212.366 kb on - strandat 212.392 kb on - strandat 212.398 kb on + strandat 212.398 kb on + strandat 212.398 kb on + strandat 212.399 kb on - strandat 212.399 kb on - strandat 212.399 kb on - strandat 212.399 kb on - strandat 212.399 kb on - strandat 212.399 kb on - strandat 212.399 kb on - strandat 212.399 kb on - strandat 212.399 kb on - strandat 212.468 kb on + strandat 212.469 kb on - strandat 212.549 kb on - strandat 212.578 kb on - strandat 212.578 kb on - strandat 212.578 kb on - strandat 212.578 kb on - strandat 212.578 kb on - strandat 212.589 kb on + strand, within EX31_RS10030at 212.590 kb on - strand, within EX31_RS10030at 212.638 kb on - strand, within EX31_RS10030at 212.642 kb on - strand, within EX31_RS10030at 212.703 kb on - strand, within EX31_RS10030at 212.836 kb on + strandat 212.837 kb on - strandat 212.837 kb on - strandat 212.948 kb on + strandat 212.949 kb on - strandat 213.000 kb on - strandat 213.173 kb on + strandat 213.203 kb on + strand, within EX31_RS10035at 213.737 kb on + strand, within EX31_RS10035at 213.737 kb on + strand, within EX31_RS10035at 214.000 kb on + strand, within EX31_RS10035at 214.067 kb on + strand, within EX31_RS10035at 214.500 kb on - strandat 214.522 kb on + strandat 214.522 kb on + strandat 214.522 kb on + strandat 214.525 kb on + strandat 214.525 kb on + strandat 214.525 kb on + strandat 214.581 kb on + strandat 214.582 kb on - strandat 214.724 kb on + strand, within EX31_RS10040at 214.724 kb on + strand, within EX31_RS10040at 214.724 kb on + strand, within EX31_RS10040at 214.724 kb on + strand, within EX31_RS10040at 214.724 kb on + strand, within EX31_RS10040at 214.724 kb on + strand, within EX31_RS10040at 214.726 kb on + strand, within EX31_RS10040at 214.727 kb on - strand, within EX31_RS10040at 214.727 kb on - strand, within EX31_RS10040at 214.727 kb on - strand, within EX31_RS10040at 214.827 kb on + strand, within EX31_RS10040at 214.827 kb on + strand, within EX31_RS10040at 214.827 kb on + strand, within EX31_RS10040at 214.827 kb on + strand, within EX31_RS10040at 214.828 kb on - strand, within EX31_RS10040at 214.828 kb on - strand, within EX31_RS10040at 214.836 kb on + strand, within EX31_RS10040at 214.903 kb on + strandat 214.904 kb on - strandat 214.984 kb on + strandat 214.985 kb on - strandat 214.985 kb on - strandat 214.995 kb on + strandat 214.995 kb on + strandat 214.995 kb on + strandat 215.082 kb on - strandat 215.216 kb on - strand, within EX31_RS10045at 215.229 kb on - strand, within EX31_RS10045at 215.314 kb on - strand, within EX31_RS10045at 215.347 kb on - strand, within EX31_RS10045at 215.347 kb on - strand, within EX31_RS10045at 215.347 kb on - strand, within EX31_RS10045at 215.376 kb on + strand, within EX31_RS10045at 215.376 kb on + strand, within EX31_RS10045at 215.377 kb on - strand, within EX31_RS10045at 215.377 kb on - strand, within EX31_RS10045at 215.377 kb on - strand, within EX31_RS10045at 215.408 kb on + strand, within EX31_RS10045

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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212,081 - EX31_RS10025 0.31 -0.8
212,131 + EX31_RS10025 0.48 -0.1
212,132 - EX31_RS10025 0.48 -0.4
212,164 - EX31_RS10025 0.59 +0.2
212,209 - EX31_RS10025 0.75 -0.3
212,366 - +1.8
212,392 - +0.6
212,398 + -0.0
212,398 + +0.4
212,398 + +1.9
212,399 - +0.7
212,399 - +2.2
212,399 - +1.9
212,399 - +0.7
212,399 - +0.8
212,399 - -0.1
212,399 - +0.2
212,399 - +1.0
212,399 - -1.2
212,468 + +2.3
212,469 - -0.8
212,549 - +2.3
212,578 - +1.0
212,578 - -0.8
212,578 - -0.7
212,578 - -0.4
212,578 - +0.2
212,589 + EX31_RS10030 0.15 -2.4
212,590 - EX31_RS10030 0.16 +0.5
212,638 - EX31_RS10030 0.42 -1.2
212,642 - EX31_RS10030 0.44 +0.6
212,703 - EX31_RS10030 0.78 +0.6
212,836 + +0.8
212,837 - +0.7
212,837 - +0.4
212,948 + -1.4
212,949 - -0.4
213,000 - +1.0
213,173 + -0.4
213,203 + EX31_RS10035 0.11 +0.6
213,737 + EX31_RS10035 0.48 -0.4
213,737 + EX31_RS10035 0.48 +1.0
214,000 + EX31_RS10035 0.66 +0.6
214,067 + EX31_RS10035 0.70 +0.6
214,500 - +1.3
214,522 + -1.2
214,522 + -0.2
214,522 + -0.3
214,525 + -0.7
214,525 + -1.1
214,525 + -0.1
214,581 + -0.2
214,582 - -0.7
214,724 + EX31_RS10040 0.44 -0.7
214,724 + EX31_RS10040 0.44 -1.4
214,724 + EX31_RS10040 0.44 -1.3
214,724 + EX31_RS10040 0.44 +0.4
214,724 + EX31_RS10040 0.44 +0.0
214,724 + EX31_RS10040 0.44 +0.9
214,726 + EX31_RS10040 0.44 +1.0
214,727 - EX31_RS10040 0.45 +1.6
214,727 - EX31_RS10040 0.45 +0.4
214,727 - EX31_RS10040 0.45 +1.3
214,827 + EX31_RS10040 0.76 +1.0
214,827 + EX31_RS10040 0.76 -0.6
214,827 + EX31_RS10040 0.76 +0.4
214,827 + EX31_RS10040 0.76 +0.1
214,828 - EX31_RS10040 0.76 -1.2
214,828 - EX31_RS10040 0.76 +0.0
214,836 + EX31_RS10040 0.78 -0.1
214,903 + -0.2
214,904 - +1.3
214,984 + -0.2
214,985 - -0.4
214,985 - +1.6
214,995 + -0.4
214,995 + -0.8
214,995 + -1.4
215,082 - +0.6
215,216 - EX31_RS10045 0.12 -0.3
215,229 - EX31_RS10045 0.14 -0.7
215,314 - EX31_RS10045 0.22 +0.9
215,347 - EX31_RS10045 0.25 +0.2
215,347 - EX31_RS10045 0.25 +2.2
215,347 - EX31_RS10045 0.25 +0.6
215,376 + EX31_RS10045 0.28 +0.0
215,376 + EX31_RS10045 0.28 +1.6
215,377 - EX31_RS10045 0.28 +0.0
215,377 - EX31_RS10045 0.28 -0.4
215,377 - EX31_RS10045 0.28 -0.2
215,408 + EX31_RS10045 0.31 +0.6

Or see this region's nucleotide sequence