Strain Fitness in Rahnella sp. WP5 around EX31_RS09205

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09200 and EX31_RS09205 are separated by 132 nucleotidesEX31_RS09205 and EX31_RS09210 are separated by 105 nucleotidesEX31_RS09210 and EX31_RS09215 are separated by 192 nucleotides EX31_RS09200: EX31_RS09200 - dihydrodipicolinate synthase family protein, at 37,951 to 38,866 _RS09200 EX31_RS09205: EX31_RS09205 - siderophore-iron reductase FhuF, at 38,999 to 39,763 _RS09205 EX31_RS09210: EX31_RS09210 - hypothetical protein, at 39,869 to 40,207 _RS09210 EX31_RS09215: EX31_RS09215 - MFS transporter, at 40,400 to 41,719 _RS09215 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2 3at 38.112 kb on + strand, within EX31_RS09200at 38.112 kb on + strand, within EX31_RS09200at 38.112 kb on + strand, within EX31_RS09200at 38.112 kb on + strand, within EX31_RS09200at 38.113 kb on - strand, within EX31_RS09200at 38.238 kb on + strand, within EX31_RS09200at 38.280 kb on - strand, within EX31_RS09200at 38.282 kb on + strand, within EX31_RS09200at 38.282 kb on + strand, within EX31_RS09200at 38.283 kb on - strand, within EX31_RS09200at 38.309 kb on + strand, within EX31_RS09200at 38.310 kb on - strand, within EX31_RS09200at 38.310 kb on - strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.361 kb on - strand, within EX31_RS09200at 38.361 kb on - strand, within EX31_RS09200at 38.361 kb on - strand, within EX31_RS09200at 38.361 kb on - strand, within EX31_RS09200at 38.453 kb on - strand, within EX31_RS09200at 38.627 kb on + strand, within EX31_RS09200at 38.664 kb on + strand, within EX31_RS09200at 38.664 kb on + strand, within EX31_RS09200at 38.702 kb on + strand, within EX31_RS09200at 38.702 kb on + strand, within EX31_RS09200at 38.703 kb on - strand, within EX31_RS09200at 38.703 kb on - strand, within EX31_RS09200at 38.723 kb on + strand, within EX31_RS09200at 38.724 kb on - strand, within EX31_RS09200at 38.724 kb on - strand, within EX31_RS09200at 38.775 kb on - strandat 38.864 kb on + strandat 38.958 kb on + strandat 38.959 kb on - strandat 38.997 kb on + strandat 38.997 kb on + strandat 38.998 kb on - strandat 38.998 kb on - strandat 38.998 kb on - strandat 38.998 kb on - strandat 39.055 kb on + strandat 39.221 kb on + strand, within EX31_RS09205at 39.221 kb on + strand, within EX31_RS09205at 39.222 kb on - strand, within EX31_RS09205at 39.327 kb on + strand, within EX31_RS09205at 39.327 kb on + strand, within EX31_RS09205at 39.327 kb on + strand, within EX31_RS09205at 39.470 kb on + strand, within EX31_RS09205at 39.727 kb on + strandat 39.727 kb on + strandat 39.774 kb on + strandat 39.793 kb on + strandat 39.794 kb on - strandat 39.794 kb on - strandat 39.830 kb on + strandat 39.830 kb on + strandat 39.830 kb on + strandat 39.830 kb on + strandat 39.830 kb on + strandat 39.831 kb on - strandat 39.832 kb on + strandat 39.833 kb on - strandat 39.844 kb on + strandat 39.844 kb on + strandat 39.844 kb on + strandat 39.845 kb on - strandat 39.845 kb on - strandat 39.845 kb on - strandat 39.845 kb on - strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.846 kb on + strandat 39.847 kb on - strandat 39.847 kb on - strandat 39.847 kb on - strandat 39.848 kb on + strandat 39.848 kb on + strandat 39.848 kb on + strandat 39.848 kb on + strandat 39.849 kb on - strandat 39.861 kb on + strandat 39.861 kb on + strandat 39.862 kb on - strandat 39.865 kb on + strandat 39.907 kb on + strand, within EX31_RS09210at 39.960 kb on + strand, within EX31_RS09210at 39.967 kb on + strand, within EX31_RS09210at 39.967 kb on + strand, within EX31_RS09210at 39.967 kb on + strand, within EX31_RS09210at 39.967 kb on + strand, within EX31_RS09210at 39.968 kb on - strand, within EX31_RS09210at 39.968 kb on - strand, within EX31_RS09210at 40.140 kb on + strand, within EX31_RS09210at 40.140 kb on + strand, within EX31_RS09210at 40.141 kb on - strand, within EX31_RS09210at 40.157 kb on + strand, within EX31_RS09210at 40.205 kb on + strandat 40.205 kb on + strandat 40.205 kb on + strandat 40.362 kb on - strandat 40.370 kb on - strandat 40.586 kb on + strand, within EX31_RS09215at 40.587 kb on - strand, within EX31_RS09215at 40.737 kb on - strand, within EX31_RS09215

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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38,112 + EX31_RS09200 0.18 +0.4
38,112 + EX31_RS09200 0.18 +0.2
38,112 + EX31_RS09200 0.18 -0.0
38,112 + EX31_RS09200 0.18 +0.2
38,113 - EX31_RS09200 0.18 +0.7
38,238 + EX31_RS09200 0.31 +1.4
38,280 - EX31_RS09200 0.36 +1.8
38,282 + EX31_RS09200 0.36 +2.2
38,282 + EX31_RS09200 0.36 +1.3
38,283 - EX31_RS09200 0.36 -0.0
38,309 + EX31_RS09200 0.39 +0.4
38,310 - EX31_RS09200 0.39 -0.7
38,310 - EX31_RS09200 0.39 +0.9
38,360 + EX31_RS09200 0.45 +0.2
38,360 + EX31_RS09200 0.45 +1.6
38,360 + EX31_RS09200 0.45 +1.8
38,360 + EX31_RS09200 0.45 -0.7
38,360 + EX31_RS09200 0.45 -0.4
38,360 + EX31_RS09200 0.45 +2.3
38,360 + EX31_RS09200 0.45 +1.6
38,360 + EX31_RS09200 0.45 +3.7
38,360 + EX31_RS09200 0.45 -2.2
38,360 + EX31_RS09200 0.45 -0.0
38,361 - EX31_RS09200 0.45 -0.0
38,361 - EX31_RS09200 0.45 +0.9
38,361 - EX31_RS09200 0.45 +0.3
38,361 - EX31_RS09200 0.45 +0.7
38,453 - EX31_RS09200 0.55 +0.3
38,627 + EX31_RS09200 0.74 +1.2
38,664 + EX31_RS09200 0.78 +1.4
38,664 + EX31_RS09200 0.78 +0.8
38,702 + EX31_RS09200 0.82 -0.7
38,702 + EX31_RS09200 0.82 -0.0
38,703 - EX31_RS09200 0.82 +0.4
38,703 - EX31_RS09200 0.82 +1.6
38,723 + EX31_RS09200 0.84 -1.1
38,724 - EX31_RS09200 0.84 -0.7
38,724 - EX31_RS09200 0.84 +0.5
38,775 - +1.1
38,864 + +1.4
38,958 + +2.6
38,959 - +0.1
38,997 + +0.9
38,997 + +1.1
38,998 - -2.3
38,998 - -0.0
38,998 - -1.1
38,998 - +0.6
39,055 + +0.9
39,221 + EX31_RS09205 0.29 -0.4
39,221 + EX31_RS09205 0.29 -0.4
39,222 - EX31_RS09205 0.29 -1.7
39,327 + EX31_RS09205 0.43 +0.6
39,327 + EX31_RS09205 0.43 -0.8
39,327 + EX31_RS09205 0.43 -0.6
39,470 + EX31_RS09205 0.62 +0.6
39,727 + -1.6
39,727 + -0.4
39,774 + +1.2
39,793 + +0.8
39,794 - +1.0
39,794 - +0.2
39,830 + -1.4
39,830 + +0.0
39,830 + -0.4
39,830 + -0.1
39,830 + +0.4
39,831 - +0.9
39,832 + -1.3
39,833 - -0.0
39,844 + +0.3
39,844 + +1.1
39,844 + -0.0
39,845 - -0.1
39,845 - -1.4
39,845 - +0.6
39,845 - +0.1
39,846 + +3.7
39,846 + +0.3
39,846 + +0.4
39,846 + +2.3
39,846 + -1.4
39,846 + +1.0
39,846 + +0.1
39,846 + -0.0
39,846 + -0.1
39,846 + +1.6
39,847 - +1.6
39,847 - -1.6
39,847 - -0.7
39,848 + -0.0
39,848 + +0.6
39,848 + +1.6
39,848 + -0.7
39,849 - -0.6
39,861 + -0.5
39,861 + -1.2
39,862 - +1.8
39,865 + -0.5
39,907 + EX31_RS09210 0.11 -1.1
39,960 + EX31_RS09210 0.27 +1.0
39,967 + EX31_RS09210 0.29 +1.6
39,967 + EX31_RS09210 0.29 -0.0
39,967 + EX31_RS09210 0.29 -0.7
39,967 + EX31_RS09210 0.29 +0.6
39,968 - EX31_RS09210 0.29 +0.2
39,968 - EX31_RS09210 0.29 +1.0
40,140 + EX31_RS09210 0.80 +0.7
40,140 + EX31_RS09210 0.80 +0.4
40,141 - EX31_RS09210 0.80 -0.4
40,157 + EX31_RS09210 0.85 -0.5
40,205 + +0.2
40,205 + -0.7
40,205 + +1.0
40,362 - +1.6
40,370 - +0.5
40,586 + EX31_RS09215 0.14 +0.5
40,587 - EX31_RS09215 0.14 +1.2
40,737 - EX31_RS09215 0.26 -0.3

Or see this region's nucleotide sequence