Strain Fitness in Rahnella sp. WP5 around EX31_RS08150

Experiment: L-Serine (N); RCH2 media; shaking

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine (N); RCH2 media; shaking
122,416	+		EX31_RS08145	0.68	+1.0
122,448	+		EX31_RS08145	0.70	-0.0
122,449	-		EX31_RS08145	0.70	+0.3
122,541	+		EX31_RS08145	0.73	-0.6
122,542	-		EX31_RS08145	0.73	-0.0
122,572	-		EX31_RS08145	0.74	-0.5
122,574	+		EX31_RS08145	0.74	+0.5
122,574	+		EX31_RS08145	0.74	+0.8
122,575	-		EX31_RS08145	0.74	-0.4
122,575	-		EX31_RS08145	0.74	+0.4
122,575	-		EX31_RS08145	0.74	-0.5
122,575	-		EX31_RS08145	0.74	+0.9
122,651	+		EX31_RS08145	0.77	+0.4
122,652	-		EX31_RS08145	0.77	-0.1
122,652	-		EX31_RS08145	0.77	+0.3
122,652	-		EX31_RS08145	0.77	+0.6
122,652	-		EX31_RS08145	0.77	-0.1
122,652	-		EX31_RS08145	0.77	-0.2
122,652	-		EX31_RS08145	0.77	+0.0
122,652	-		EX31_RS08145	0.77	+0.5
122,878	+		EX31_RS08145	0.85	+0.5
122,905	-		EX31_RS08145	0.86	-0.4
123,020	-		EX31_RS08145	0.90	-0.4
123,038	+				+0.1
123,038	+				+0.9
123,038	+				-0.3
123,038	+				+0.7
123,039	-				+0.6
123,103	-				-0.3
123,183	-				+0.7
123,357	+				+1.2
123,357	+				-0.2
123,357	+				-0.5
123,358	-				+0.8
123,369	-				+0.4
123,487	-				+0.3
123,488	+				-0.3
123,489	-				-0.8
123,489	-				-0.2
123,489	-				-1.0
123,489	-				-0.6
123,489	-				-0.4
123,538	-		EX31_RS08150	0.13	-2.2
123,538	-		EX31_RS08150	0.13	-0.8
123,538	-		EX31_RS08150	0.13	-1.2
123,538	-		EX31_RS08150	0.13	-1.9
123,538	-		EX31_RS08150	0.13	-1.6
123,538	-		EX31_RS08150	0.13	-0.8
123,696	+		EX31_RS08150	0.25	-0.3
123,696	+		EX31_RS08150	0.25	-2.1
123,696	+		EX31_RS08150	0.25	-1.4
123,696	+		EX31_RS08150	0.25	-2.7
123,697	-		EX31_RS08150	0.25	+1.4
123,697	-		EX31_RS08150	0.25	-0.5
123,697	-		EX31_RS08150	0.25	-0.3
123,697	-		EX31_RS08150	0.25	-0.5
123,756	-		EX31_RS08150	0.30	-2.0
123,822	+		EX31_RS08150	0.35	-1.7
123,822	+		EX31_RS08150	0.35	-2.4
123,823	-		EX31_RS08150	0.35	-3.2
123,826	+		EX31_RS08150	0.35	-0.5
123,826	+		EX31_RS08150	0.35	-2.5
123,827	-		EX31_RS08150	0.35	-2.3
123,827	-		EX31_RS08150	0.35	-1.3
123,827	-		EX31_RS08150	0.35	-1.0
123,827	-		EX31_RS08150	0.35	-0.9
123,827	-		EX31_RS08150	0.35	-2.8
123,827	-		EX31_RS08150	0.35	-0.4
123,827	-		EX31_RS08150	0.35	-0.9
123,831	+		EX31_RS08150	0.35	-0.8
123,831	+		EX31_RS08150	0.35	-1.7
123,831	+		EX31_RS08150	0.35	-1.6
123,831	+		EX31_RS08150	0.35	-2.1
123,832	-		EX31_RS08150	0.36	-2.0
123,832	-		EX31_RS08150	0.36	-0.8
123,832	-		EX31_RS08150	0.36	-0.3
123,853	-		EX31_RS08150	0.37	-1.4
123,910	+		EX31_RS08150	0.42	+0.6
123,911	-		EX31_RS08150	0.42	-1.9
123,911	-		EX31_RS08150	0.42	-1.0
123,962	+		EX31_RS08150	0.45	-0.1
123,963	-		EX31_RS08150	0.46	-0.6
123,963	-		EX31_RS08150	0.46	-0.4
123,963	-		EX31_RS08150	0.46	-1.5
123,963	-		EX31_RS08150	0.46	-1.5
124,002	+		EX31_RS08150	0.49	-3.2
124,002	+		EX31_RS08150	0.49	-1.2
124,002	+		EX31_RS08150	0.49	-0.4
124,003	-		EX31_RS08150	0.49	-2.7
124,003	-		EX31_RS08150	0.49	-3.0
124,003	-		EX31_RS08150	0.49	-1.6
124,017	+		EX31_RS08150	0.50	-1.7
124,017	+		EX31_RS08150	0.50	-2.1
124,018	-		EX31_RS08150	0.50	-0.6
124,018	-		EX31_RS08150	0.50	-1.0
124,035	+		EX31_RS08150	0.51	-1.9
124,177	-		EX31_RS08150	0.62	-1.9
124,250	-		EX31_RS08150	0.68	-1.6
124,250	-		EX31_RS08150	0.68	-2.4
124,371	+		EX31_RS08150	0.77	-3.0
124,371	+		EX31_RS08150	0.77	-1.4
124,371	+		EX31_RS08150	0.77	-1.7
124,372	-		EX31_RS08150	0.77	-1.5
124,372	-		EX31_RS08150	0.77	-1.4
124,372	-		EX31_RS08150	0.77	+2.5
124,372	-		EX31_RS08150	0.77	-2.2
124,424	+		EX31_RS08150	0.81	-1.4
124,424	+		EX31_RS08150	0.81	-0.8
124,424	+		EX31_RS08150	0.81	-2.0
124,424	+		EX31_RS08150	0.81	-1.0
124,424	+		EX31_RS08150	0.81	-1.5
124,425	-		EX31_RS08150	0.81	-1.0
124,425	-		EX31_RS08150	0.81	-0.5
124,425	-		EX31_RS08150	0.81	-2.7
124,425	-		EX31_RS08150	0.81	-2.0
124,425	-		EX31_RS08150	0.81	-1.2
124,425	-		EX31_RS08150	0.81	-2.1
124,441	+		EX31_RS08150	0.82	-0.8
124,441	+		EX31_RS08150	0.82	+2.5
124,441	+		EX31_RS08150	0.82	-0.8
124,441	+		EX31_RS08150	0.82	-1.8
124,441	+		EX31_RS08150	0.82	-0.6
124,441	+		EX31_RS08150	0.82	+0.2
124,441	+		EX31_RS08150	0.82	-1.7
124,442	-		EX31_RS08150	0.82	-2.2
124,442	-		EX31_RS08150	0.82	-2.3
124,442	-		EX31_RS08150	0.82	-1.0
124,442	-		EX31_RS08150	0.82	-1.3
124,442	-		EX31_RS08150	0.82	-1.1
124,442	-		EX31_RS08150	0.82	-0.6
124,442	-		EX31_RS08150	0.82	-2.0
124,485	-		EX31_RS08150	0.85	-0.7
124,531	+		EX31_RS08150	0.89	-0.8
124,531	+		EX31_RS08150	0.89	-1.0
124,531	+		EX31_RS08150	0.89	-1.0
124,531	+		EX31_RS08150	0.89	-2.7
124,532	-		EX31_RS08150	0.89	-2.3
124,532	-		EX31_RS08150	0.89	-3.4
124,532	-		EX31_RS08150	0.89	-1.1
124,532	-		EX31_RS08150	0.89	-1.9
124,532	-		EX31_RS08150	0.89	-2.2
124,532	-		EX31_RS08150	0.89	-0.5
124,532	-		EX31_RS08150	0.89	-1.1
124,532	-		EX31_RS08150	0.89	-1.9
124,532	-		EX31_RS08150	0.89	-1.1
124,535	+		EX31_RS08150	0.89	-2.4
124,535	+		EX31_RS08150	0.89	-1.5
124,535	+		EX31_RS08150	0.89	-3.0
124,535	+		EX31_RS08150	0.89	-3.1
124,536	-		EX31_RS08150	0.89	-1.6
124,557	-				-1.4
124,557	-				-2.1
124,557	-				-1.9
124,557	-				-2.3
124,596	+				-1.6
124,597	-				-1.9
124,618	+				-1.0
124,618	+				-1.5
124,619	-				-2.6
124,619	-				-2.1
124,660	+				-3.1
124,660	+				-1.6
124,660	+				-1.8
124,661	-				-1.4
124,661	-				-2.1
124,674	+				-2.8
124,674	+				-2.3
124,674	+				-1.5
124,674	+				-2.4
124,675	-				+0.8
124,675	-				+0.0
124,675	-				-0.6
124,675	-				-0.3
124,675	-				+0.8
124,675	-				-0.1
124,675	-				+0.1
124,675	-				-0.4
124,733	+				+3.5
124,733	+				-0.9
124,733	+				-0.5
124,733	+				+1.3
124,734	-				+0.3
124,734	-				+1.3
124,738	+				+0.5
124,738	+				+0.5
124,738	+				-1.2
124,738	+				-0.1
124,738	+				+1.1
124,773	+				-0.1
124,773	+				-0.3
124,773	+				+0.9
124,773	+				+0.4
124,773	+				+0.5
124,774	-				+0.9
124,774	-				+0.1
124,774	-				+0.0
124,774	-				-0.3
124,774	-				+0.1
124,774	-				-0.8
124,774	-				+0.6
124,778	+				-0.1
124,779	-				-1.1
124,779	-				+2.0
124,796	-				+0.2
124,797	+				-0.1
124,797	+				+0.5
124,797	+				-1.4
124,797	+				+0.6
124,797	+				-0.3
124,797	+				+0.7
124,797	+				-0.6
124,797	+				-0.3
124,797	+				-0.7
124,798	-				+0.5
124,798	-				+0.4
124,798	-				+0.3
124,798	-				-0.4
124,798	-				+0.3
124,798	-				+0.3
124,798	-				-0.6
124,798	-				+0.4
124,825	-				-0.6
124,827	+				+0.2
124,828	-				+0.5
124,828	-				+0.5
124,847	+				+0.0
124,847	+				-0.8
124,847	+				-0.3
124,848	-				+0.0
124,848	-				-0.2
124,851	+				+0.5
124,851	+				-0.5
124,851	+				+0.5
124,851	+				-0.5
124,851	+				+2.8
124,851	+				-0.3
124,851	+				+0.7
124,851	+				-0.8
124,851	+				-0.5
124,851	+				-0.5
124,851	+				+0.5
124,851	+				+0.9
124,851	+				+0.2
124,851	+				-0.4
124,851	+				+0.6
124,851	+				+0.5
124,851	+				-0.1
124,851	+				+0.0
124,851	+				-0.1
124,851	+				+0.3
124,851	+				+2.0
124,851	+				+0.5
124,851	+				+0.1
124,851	+				-1.3
124,851	+				+0.4
124,851	+				-0.7
124,851	+				-1.1
124,851	+				-1.0
124,851	+				+0.5
124,851	+				+0.3
124,851	+				-0.1
124,851	+				+1.5
124,851	+				-0.3
124,851	+				-0.3
124,851	+				-0.3
124,851	+				+0.2
124,851	+				-0.3
124,851	+				+0.2
124,851	+				-0.5
124,851	+				-0.3
124,851	+				+0.7
124,851	+				+0.1
124,851	+				+0.4
124,851	+				+0.5
124,851	+				-0.9
124,851	+				+1.4
124,852	-				+0.2
124,852	-				-0.3
124,852	-				+0.3
124,852	-				-0.0
124,852	-				-0.1
124,852	-				+0.1
124,852	-				+0.2
124,852	-				+0.9
124,852	-				-1.0
124,852	-				+0.3
124,852	-				+0.7
124,852	-				+0.2
124,852	-				-0.3
124,852	-				+0.2
124,852	-				-0.9
124,852	-				+1.1
124,852	-				+0.9
124,852	-				-1.0
124,852	-				-0.5
124,852	-				+0.9
124,852	-				-0.1
124,852	-				-2.0
124,852	-				+0.6
124,852	-				+0.4
124,852	-				+0.7
124,852	-				+0.0
124,852	-				-0.0
124,852	-				+0.3
124,852	-				+0.2
124,852	-				-0.1
124,852	-				+1.1
124,852	-				-0.5
124,852	-				+0.3
124,852	-				+0.7
124,852	-				+0.2
124,852	-				+0.5
124,852	-				+0.8
124,852	-				+1.2
124,852	-				+0.5
124,852	-				+0.4
124,852	-				+0.0
124,852	-				+0.5
124,852	-				-0.3
124,852	-				+0.2
124,852	-				+1.4
124,852	-				+0.7
124,852	-				-0.8
124,852	-				+1.2
124,852	-				+1.4
124,852	-				+0.6
124,852	-				+0.4
124,852	-				-0.4
124,852	-				+0.6
124,853	+				-0.1
124,853	+				+0.5
124,853	+				-0.1
124,853	+				+0.0
124,853	+				-0.2
124,853	+				+0.6
124,853	+				+0.3
124,853	+				+0.2
124,853	+				-0.3
124,853	+				+0.4
124,853	+				+1.6
124,853	+				+1.3
124,853	+				+0.5
124,854	-				-0.0
124,854	-				+0.6
124,854	-				+0.7
124,854	-				+0.4
124,854	-				+0.8
124,854	-				+0.4
124,854	-				+1.1
124,854	-				-0.1
124,854	-				+0.5
124,854	-				-0.7
124,854	-				-0.8
124,854	-				+0.9
124,894	+				-0.2
124,953	+				+1.2
124,954	-				-0.4
124,954	-				+1.2
124,954	-				-1.3
124,954	-				-0.3
124,965	+				-0.4
124,971	+				+0.1
124,972	-				-1.1
124,972	-				+0.2
124,995	+				+0.7
124,995	+				+1.6
124,995	+				-0.5
124,995	+				-0.1
124,996	-				-1.3
124,996	-				-0.1
124,996	-				+1.3
125,033	+		EX31_RS08155	0.13	+0.5
125,033	+		EX31_RS08155	0.13	-0.7
125,033	+		EX31_RS08155	0.13	+0.0
125,033	+		EX31_RS08155	0.13	+0.4
125,033	+		EX31_RS08155	0.13	-0.5
125,034	-		EX31_RS08155	0.13	-0.3
125,034	-		EX31_RS08155	0.13	-1.1
125,035	+		EX31_RS08155	0.13	+0.1
125,035	+		EX31_RS08155	0.13	+0.8
125,035	+		EX31_RS08155	0.13	+1.0
125,036	-		EX31_RS08155	0.13	+1.9
125,036	-		EX31_RS08155	0.13	-0.1
125,053	+		EX31_RS08155	0.16	+0.1
125,057	+		EX31_RS08155	0.16	-0.3
125,057	+		EX31_RS08155	0.16	+0.3
125,057	+		EX31_RS08155	0.16	-0.3
125,057	+		EX31_RS08155	0.16	+0.0
125,057	+		EX31_RS08155	0.16	+0.7
125,057	+		EX31_RS08155	0.16	-0.8
125,057	+		EX31_RS08155	0.16	-0.0
125,057	+		EX31_RS08155	0.16	+0.0
125,057	+		EX31_RS08155	0.16	+0.8
125,057	+		EX31_RS08155	0.16	+0.6
125,057	+		EX31_RS08155	0.16	+0.3
125,057	+		EX31_RS08155	0.16	-0.4
125,057	+		EX31_RS08155	0.16	+2.3
125,057	+		EX31_RS08155	0.16	+0.5
125,057	+		EX31_RS08155	0.16	+0.6
125,057	+		EX31_RS08155	0.16	+0.4
125,057	+		EX31_RS08155	0.16	+0.4
125,057	+		EX31_RS08155	0.16	+1.6
125,058	-		EX31_RS08155	0.17	+0.7
125,058	-		EX31_RS08155	0.17	-1.1
125,058	-		EX31_RS08155	0.17	+0.6
125,058	-		EX31_RS08155	0.17	-0.5
125,058	-		EX31_RS08155	0.17	+0.4
125,058	-		EX31_RS08155	0.17	+0.4
125,058	-		EX31_RS08155	0.17	+1.3
125,058	-		EX31_RS08155	0.17	+0.1
125,058	-		EX31_RS08155	0.17	+0.2
125,058	-		EX31_RS08155	0.17	+0.5
125,058	-		EX31_RS08155	0.17	+0.6
125,058	-		EX31_RS08155	0.17	+0.7
125,058	-		EX31_RS08155	0.17	+0.4
125,058	-		EX31_RS08155	0.17	+0.3
125,077	+		EX31_RS08155	0.20	-1.4
125,153	+		EX31_RS08155	0.32	+1.2
125,153	+		EX31_RS08155	0.32	-1.6
125,209	-		EX31_RS08155	0.41	+0.1
125,288	-		EX31_RS08155	0.54	+0.5
125,662	+				-0.4
125,663	-				+0.5