Strain Fitness in Rahnella sp. WP5 around EX31_RS06680

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06675 and EX31_RS06680 overlap by 4 nucleotidesEX31_RS06680 and EX31_RS06685 are separated by 5 nucleotides EX31_RS06675: EX31_RS06675 - cellulose biosynthesis protein BcsG, at 114,335 to 115,981 _RS06675 EX31_RS06680: EX31_RS06680 - cellulose biosynthesis protein BcsF, at 115,978 to 116,211 _RS06680 EX31_RS06685: EX31_RS06685 - cellulose biosynthesis protein BcsE, at 116,217 to 117,815 _RS06685 Position (kb) 115 116 117Strain fitness (log2 ratio) -2 -1 0 1 2at 115.013 kb on - strand, within EX31_RS06675at 115.020 kb on + strand, within EX31_RS06675at 115.020 kb on + strand, within EX31_RS06675at 115.024 kb on + strand, within EX31_RS06675at 115.386 kb on - strand, within EX31_RS06675at 115.390 kb on - strand, within EX31_RS06675at 115.433 kb on - strand, within EX31_RS06675at 115.590 kb on - strand, within EX31_RS06675at 115.591 kb on + strand, within EX31_RS06675at 115.591 kb on + strand, within EX31_RS06675at 115.592 kb on - strand, within EX31_RS06675at 115.821 kb on - strandat 115.870 kb on - strandat 115.905 kb on + strandat 115.981 kb on + strandat 115.982 kb on - strandat 116.028 kb on + strand, within EX31_RS06680at 116.029 kb on - strand, within EX31_RS06680at 116.050 kb on - strand, within EX31_RS06680at 116.050 kb on - strand, within EX31_RS06680at 116.197 kb on - strandat 116.448 kb on - strand, within EX31_RS06685at 116.610 kb on + strand, within EX31_RS06685at 116.654 kb on + strand, within EX31_RS06685at 116.692 kb on + strand, within EX31_RS06685at 116.693 kb on - strand, within EX31_RS06685at 116.699 kb on + strand, within EX31_RS06685at 116.700 kb on - strand, within EX31_RS06685at 116.700 kb on - strand, within EX31_RS06685at 116.760 kb on - strand, within EX31_RS06685at 116.760 kb on - strand, within EX31_RS06685at 116.761 kb on + strand, within EX31_RS06685at 116.761 kb on + strand, within EX31_RS06685at 116.761 kb on + strand, within EX31_RS06685at 116.761 kb on + strand, within EX31_RS06685at 116.762 kb on - strand, within EX31_RS06685at 116.762 kb on - strand, within EX31_RS06685at 116.762 kb on - strand, within EX31_RS06685at 116.869 kb on + strand, within EX31_RS06685at 116.870 kb on - strand, within EX31_RS06685at 116.908 kb on - strand, within EX31_RS06685at 117.204 kb on - strand, within EX31_RS06685at 117.204 kb on - strand, within EX31_RS06685at 117.204 kb on - strand, within EX31_RS06685

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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115,013 - EX31_RS06675 0.41 +0.0
115,020 + EX31_RS06675 0.42 +0.6
115,020 + EX31_RS06675 0.42 +1.8
115,024 + EX31_RS06675 0.42 -0.6
115,386 - EX31_RS06675 0.64 +0.0
115,390 - EX31_RS06675 0.64 +0.0
115,433 - EX31_RS06675 0.67 +0.6
115,590 - EX31_RS06675 0.76 +0.5
115,591 + EX31_RS06675 0.76 +2.6
115,591 + EX31_RS06675 0.76 -0.7
115,592 - EX31_RS06675 0.76 +0.3
115,821 - +0.7
115,870 - +1.2
115,905 + -0.6
115,981 + -0.6
115,982 - +1.6
116,028 + EX31_RS06680 0.21 +0.0
116,029 - EX31_RS06680 0.22 +0.6
116,050 - EX31_RS06680 0.31 -0.4
116,050 - EX31_RS06680 0.31 -1.1
116,197 - -0.4
116,448 - EX31_RS06685 0.14 +1.3
116,610 + EX31_RS06685 0.25 -2.1
116,654 + EX31_RS06685 0.27 +0.6
116,692 + EX31_RS06685 0.30 +0.3
116,693 - EX31_RS06685 0.30 +1.6
116,699 + EX31_RS06685 0.30 +1.2
116,700 - EX31_RS06685 0.30 +0.6
116,700 - EX31_RS06685 0.30 -0.5
116,760 - EX31_RS06685 0.34 -0.6
116,760 - EX31_RS06685 0.34 -1.0
116,761 + EX31_RS06685 0.34 -0.4
116,761 + EX31_RS06685 0.34 +1.4
116,761 + EX31_RS06685 0.34 -0.4
116,761 + EX31_RS06685 0.34 +0.6
116,762 - EX31_RS06685 0.34 -2.5
116,762 - EX31_RS06685 0.34 +1.6
116,762 - EX31_RS06685 0.34 +0.3
116,869 + EX31_RS06685 0.41 -1.7
116,870 - EX31_RS06685 0.41 +0.7
116,908 - EX31_RS06685 0.43 +0.3
117,204 - EX31_RS06685 0.62 +0.1
117,204 - EX31_RS06685 0.62 +0.3
117,204 - EX31_RS06685 0.62 -1.4

Or see this region's nucleotide sequence