Strain Fitness in Rahnella sp. WP5 around EX31_RS06605

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06595 and EX31_RS06600 overlap by 8 nucleotidesEX31_RS06600 and EX31_RS06605 are separated by 9 nucleotidesEX31_RS06605 and EX31_RS06610 are separated by 0 nucleotides EX31_RS06595: EX31_RS06595 - electron transport complex subunit E, at 94,615 to 95,313 _RS06595 EX31_RS06600: EX31_RS06600 - electron transport complex subunit RsxG, at 95,306 to 95,938 _RS06600 EX31_RS06605: EX31_RS06605 - electron transport complex subunit RsxD, at 95,948 to 97,000 _RS06605 EX31_RS06610: EX31_RS06610 - electron transport complex subunit RsxC, at 97,001 to 99,106 _RS06610 Position (kb) 95 96 97 98Strain fitness (log2 ratio) -2 -1 0 1at 95.046 kb on - strand, within EX31_RS06595at 95.046 kb on - strand, within EX31_RS06595at 95.100 kb on - strand, within EX31_RS06595at 95.133 kb on + strand, within EX31_RS06595at 95.179 kb on - strand, within EX31_RS06595at 95.269 kb on - strandat 95.385 kb on - strand, within EX31_RS06600at 95.410 kb on + strand, within EX31_RS06600at 95.411 kb on - strand, within EX31_RS06600at 95.441 kb on - strand, within EX31_RS06600at 95.587 kb on - strand, within EX31_RS06600at 95.587 kb on - strand, within EX31_RS06600at 95.701 kb on - strand, within EX31_RS06600at 95.701 kb on - strand, within EX31_RS06600at 95.701 kb on - strand, within EX31_RS06600at 95.776 kb on - strand, within EX31_RS06600at 95.776 kb on - strand, within EX31_RS06600at 95.820 kb on - strand, within EX31_RS06600at 95.876 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.930 kb on - strandat 95.934 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.979 kb on + strandat 96.015 kb on - strandat 96.015 kb on - strandat 96.075 kb on - strand, within EX31_RS06605at 96.255 kb on - strand, within EX31_RS06605at 96.255 kb on - strand, within EX31_RS06605at 96.481 kb on - strand, within EX31_RS06605at 96.503 kb on - strand, within EX31_RS06605at 96.503 kb on - strand, within EX31_RS06605at 96.558 kb on - strand, within EX31_RS06605at 96.558 kb on - strand, within EX31_RS06605at 96.619 kb on - strand, within EX31_RS06605at 96.619 kb on - strand, within EX31_RS06605at 96.619 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.624 kb on - strand, within EX31_RS06605at 96.743 kb on - strand, within EX31_RS06605at 96.816 kb on - strand, within EX31_RS06605at 96.917 kb on - strandat 96.947 kb on - strandat 96.971 kb on - strandat 96.971 kb on - strandat 96.971 kb on - strandat 97.002 kb on + strandat 97.003 kb on - strandat 97.445 kb on - strand, within EX31_RS06610at 97.786 kb on - strand, within EX31_RS06610at 97.789 kb on - strand, within EX31_RS06610at 97.789 kb on - strand, within EX31_RS06610at 97.805 kb on - strand, within EX31_RS06610at 97.821 kb on + strand, within EX31_RS06610at 97.822 kb on - strand, within EX31_RS06610at 97.822 kb on - strand, within EX31_RS06610at 97.822 kb on - strand, within EX31_RS06610at 97.822 kb on - strand, within EX31_RS06610at 97.822 kb on - strand, within EX31_RS06610at 97.822 kb on - strand, within EX31_RS06610at 97.920 kb on - strand, within EX31_RS06610

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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95,046 - EX31_RS06595 0.62 +0.1
95,046 - EX31_RS06595 0.62 +1.1
95,100 - EX31_RS06595 0.69 -0.2
95,133 + EX31_RS06595 0.74 +0.6
95,179 - EX31_RS06595 0.81 -0.2
95,269 - -0.9
95,385 - EX31_RS06600 0.12 +0.5
95,410 + EX31_RS06600 0.16 -0.7
95,411 - EX31_RS06600 0.17 +0.1
95,441 - EX31_RS06600 0.21 -0.8
95,587 - EX31_RS06600 0.44 -0.7
95,587 - EX31_RS06600 0.44 -0.6
95,701 - EX31_RS06600 0.62 -0.5
95,701 - EX31_RS06600 0.62 -0.9
95,701 - EX31_RS06600 0.62 -2.7
95,776 - EX31_RS06600 0.74 -0.6
95,776 - EX31_RS06600 0.74 +0.6
95,820 - EX31_RS06600 0.81 +1.0
95,876 - -1.2
95,930 - -1.2
95,930 - -0.9
95,930 - -0.2
95,930 - -2.2
95,930 - -1.3
95,930 - +1.0
95,930 - -2.1
95,930 - -2.2
95,930 - +1.2
95,934 - -0.3
95,939 - -1.2
95,939 - -1.6
95,939 - -0.3
95,939 - -0.1
95,939 - -0.1
95,939 - -1.2
95,939 - -0.2
95,939 - +0.1
95,939 - -0.4
95,979 + +1.6
96,015 - -1.7
96,015 - -1.0
96,075 - EX31_RS06605 0.12 +0.6
96,255 - EX31_RS06605 0.29 -2.0
96,255 - EX31_RS06605 0.29 +0.1
96,481 - EX31_RS06605 0.51 -0.2
96,503 - EX31_RS06605 0.53 -1.3
96,503 - EX31_RS06605 0.53 -1.7
96,558 - EX31_RS06605 0.58 -1.4
96,558 - EX31_RS06605 0.58 -1.1
96,619 - EX31_RS06605 0.64 -0.4
96,619 - EX31_RS06605 0.64 -1.1
96,619 - EX31_RS06605 0.64 +0.9
96,624 - EX31_RS06605 0.64 -0.4
96,624 - EX31_RS06605 0.64 +0.1
96,624 - EX31_RS06605 0.64 -0.1
96,624 - EX31_RS06605 0.64 -0.7
96,624 - EX31_RS06605 0.64 -2.2
96,624 - EX31_RS06605 0.64 +0.1
96,624 - EX31_RS06605 0.64 -1.0
96,624 - EX31_RS06605 0.64 -0.1
96,624 - EX31_RS06605 0.64 -0.8
96,743 - EX31_RS06605 0.75 +0.3
96,816 - EX31_RS06605 0.82 -1.2
96,917 - -1.9
96,947 - +0.0
96,971 - -0.1
96,971 - -0.5
96,971 - -1.6
97,002 + -0.8
97,003 - +0.3
97,445 - EX31_RS06610 0.21 +1.0
97,786 - EX31_RS06610 0.37 +0.3
97,789 - EX31_RS06610 0.37 -0.1
97,789 - EX31_RS06610 0.37 +0.6
97,805 - EX31_RS06610 0.38 +0.2
97,821 + EX31_RS06610 0.39 -1.0
97,822 - EX31_RS06610 0.39 -0.8
97,822 - EX31_RS06610 0.39 -0.1
97,822 - EX31_RS06610 0.39 +0.3
97,822 - EX31_RS06610 0.39 -0.7
97,822 - EX31_RS06610 0.39 -1.0
97,822 - EX31_RS06610 0.39 +0.0
97,920 - EX31_RS06610 0.44 -1.3

Or see this region's nucleotide sequence