Strain Fitness in Rahnella sp. WP5 around EX31_RS03210

Experiment: L-Serine (N); RCH2 media; shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS03205 and EX31_RS03210 are separated by 103 nucleotidesEX31_RS03210 and EX31_RS03215 overlap by 4 nucleotidesEX31_RS03215 and EX31_RS03220 are separated by 1 nucleotides EX31_RS03205: EX31_RS03205 - glutamate-1-semialdehyde 2,1-aminomutase, at 126,659 to 127,939 _RS03205 EX31_RS03210: EX31_RS03210 - Fe(3+)-hydroxamate ABC transporter permease FhuB, at 128,043 to 130,031 _RS03210 EX31_RS03215: EX31_RS03215 - Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD, at 130,028 to 130,930 _RS03215 EX31_RS03220: EX31_RS03220 - Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC, at 130,932 to 131,744 _RS03220 Position (kb) 128 129 130 131Strain fitness (log2 ratio) -2 -1 0 1 2at 127.982 kb on + strandat 127.982 kb on + strandat 127.982 kb on + strandat 127.982 kb on + strandat 127.982 kb on + strandat 127.982 kb on + strandat 127.983 kb on - strandat 128.011 kb on + strandat 128.011 kb on + strandat 128.012 kb on - strandat 128.012 kb on - strandat 128.183 kb on + strandat 128.387 kb on + strand, within EX31_RS03210at 128.391 kb on + strand, within EX31_RS03210at 128.587 kb on - strand, within EX31_RS03210at 128.591 kb on + strand, within EX31_RS03210at 128.591 kb on + strand, within EX31_RS03210at 128.591 kb on + strand, within EX31_RS03210at 128.592 kb on - strand, within EX31_RS03210at 128.592 kb on - strand, within EX31_RS03210at 128.592 kb on - strand, within EX31_RS03210at 128.819 kb on + strand, within EX31_RS03210at 128.820 kb on - strand, within EX31_RS03210at 128.820 kb on - strand, within EX31_RS03210at 128.878 kb on - strand, within EX31_RS03210at 129.045 kb on - strand, within EX31_RS03210at 129.069 kb on + strand, within EX31_RS03210at 129.261 kb on - strand, within EX31_RS03210at 129.304 kb on - strand, within EX31_RS03210at 129.502 kb on + strand, within EX31_RS03210at 129.502 kb on + strand, within EX31_RS03210at 129.502 kb on + strand, within EX31_RS03210at 129.503 kb on - strand, within EX31_RS03210at 129.503 kb on - strand, within EX31_RS03210at 129.767 kb on + strand, within EX31_RS03210at 129.780 kb on - strand, within EX31_RS03210at 129.780 kb on - strand, within EX31_RS03210at 129.784 kb on - strand, within EX31_RS03210at 129.786 kb on + strand, within EX31_RS03210at 129.786 kb on + strand, within EX31_RS03210at 129.955 kb on + strandat 129.955 kb on + strandat 129.956 kb on - strandat 130.095 kb on + strandat 130.214 kb on + strand, within EX31_RS03215at 130.229 kb on - strand, within EX31_RS03215at 130.479 kb on - strand, within EX31_RS03215at 130.502 kb on - strand, within EX31_RS03215at 130.502 kb on - strand, within EX31_RS03215at 130.637 kb on + strand, within EX31_RS03215at 130.649 kb on - strand, within EX31_RS03215at 130.728 kb on + strand, within EX31_RS03215at 130.728 kb on + strand, within EX31_RS03215at 130.728 kb on + strand, within EX31_RS03215at 130.729 kb on - strand, within EX31_RS03215at 130.729 kb on - strand, within EX31_RS03215at 130.732 kb on + strand, within EX31_RS03215at 130.733 kb on - strand, within EX31_RS03215at 130.922 kb on - strandat 130.930 kb on + strandat 130.930 kb on + strandat 130.930 kb on + strandat 130.931 kb on - strandat 130.931 kb on - strandat 130.931 kb on - strandat 130.931 kb on - strandat 130.931 kb on - strandat 130.936 kb on + strandat 130.997 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
remove
127,982 + +0.7
127,982 + -1.0
127,982 + -0.4
127,982 + -0.7
127,982 + +0.6
127,982 + -0.6
127,983 - +0.9
128,011 + -0.7
128,011 + +0.1
128,012 - -0.8
128,012 - -0.3
128,183 + -0.6
128,387 + EX31_RS03210 0.17 +0.4
128,391 + EX31_RS03210 0.17 +0.5
128,587 - EX31_RS03210 0.27 +0.8
128,591 + EX31_RS03210 0.28 -1.6
128,591 + EX31_RS03210 0.28 -0.6
128,591 + EX31_RS03210 0.28 -1.3
128,592 - EX31_RS03210 0.28 -0.8
128,592 - EX31_RS03210 0.28 +1.8
128,592 - EX31_RS03210 0.28 -0.7
128,819 + EX31_RS03210 0.39 -0.3
128,820 - EX31_RS03210 0.39 -0.7
128,820 - EX31_RS03210 0.39 -0.5
128,878 - EX31_RS03210 0.42 +0.1
129,045 - EX31_RS03210 0.50 -2.1
129,069 + EX31_RS03210 0.52 +2.2
129,261 - EX31_RS03210 0.61 -0.3
129,304 - EX31_RS03210 0.63 -0.2
129,502 + EX31_RS03210 0.73 -1.7
129,502 + EX31_RS03210 0.73 -0.4
129,502 + EX31_RS03210 0.73 +0.2
129,503 - EX31_RS03210 0.73 -0.2
129,503 - EX31_RS03210 0.73 -1.5
129,767 + EX31_RS03210 0.87 -0.1
129,780 - EX31_RS03210 0.87 +0.0
129,780 - EX31_RS03210 0.87 +0.9
129,784 - EX31_RS03210 0.88 -1.5
129,786 + EX31_RS03210 0.88 -0.6
129,786 + EX31_RS03210 0.88 +1.6
129,955 + -1.1
129,955 + +0.2
129,956 - -1.2
130,095 + +0.1
130,214 + EX31_RS03215 0.21 +0.2
130,229 - EX31_RS03215 0.22 +0.8
130,479 - EX31_RS03215 0.50 +0.3
130,502 - EX31_RS03215 0.52 +1.0
130,502 - EX31_RS03215 0.52 +0.5
130,637 + EX31_RS03215 0.67 -0.4
130,649 - EX31_RS03215 0.69 -0.4
130,728 + EX31_RS03215 0.78 +0.2
130,728 + EX31_RS03215 0.78 -0.6
130,728 + EX31_RS03215 0.78 -1.7
130,729 - EX31_RS03215 0.78 -0.0
130,729 - EX31_RS03215 0.78 -0.4
130,732 + EX31_RS03215 0.78 -0.6
130,733 - EX31_RS03215 0.78 +0.2
130,922 - -0.6
130,930 + -1.6
130,930 + -1.9
130,930 + +0.2
130,931 - -0.5
130,931 - +0.3
130,931 - -1.2
130,931 - +0.7
130,931 - -0.3
130,936 + +1.4
130,997 - -0.4

Or see this region's nucleotide sequence