Strain Fitness in Rahnella sp. WP5 around EX31_RS01280

Experiment: L-Serine (N); RCH2 media; shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS01275 and EX31_RS01280 are separated by 43 nucleotidesEX31_RS01280 and EX31_RS01285 are separated by 3 nucleotidesEX31_RS01285 and EX31_RS01290 are separated by 107 nucleotides EX31_RS01275: EX31_RS01275 - acyltransferase, at 283,463 to 284,452 _RS01275 EX31_RS01280: EX31_RS01280 - SgcJ/EcaC family oxidoreductase, at 284,496 to 284,894 _RS01280 EX31_RS01285: EX31_RS01285 - sulfite exporter TauE/SafE family protein, at 284,898 to 285,623 _RS01285 EX31_RS01290: EX31_RS01290 - LysR family transcriptional regulator, at 285,731 to 286,621 _RS01290 Position (kb) 284 285Strain fitness (log2 ratio) -2 -1 0 1 2at 283.531 kb on + strandat 283.585 kb on + strand, within EX31_RS01275at 283.609 kb on + strand, within EX31_RS01275at 283.609 kb on + strand, within EX31_RS01275at 283.775 kb on + strand, within EX31_RS01275at 283.775 kb on + strand, within EX31_RS01275at 283.775 kb on + strand, within EX31_RS01275at 283.775 kb on + strand, within EX31_RS01275at 283.775 kb on + strand, within EX31_RS01275at 283.775 kb on + strand, within EX31_RS01275at 283.775 kb on + strand, within EX31_RS01275at 283.775 kb on + strand, within EX31_RS01275at 283.775 kb on + strand, within EX31_RS01275at 283.775 kb on + strand, within EX31_RS01275at 283.776 kb on - strand, within EX31_RS01275at 283.776 kb on - strand, within EX31_RS01275at 283.776 kb on - strand, within EX31_RS01275at 283.777 kb on + strand, within EX31_RS01275at 283.871 kb on + strand, within EX31_RS01275at 283.871 kb on + strand, within EX31_RS01275at 283.871 kb on + strand, within EX31_RS01275at 283.871 kb on + strand, within EX31_RS01275at 283.872 kb on - strand, within EX31_RS01275at 283.872 kb on - strand, within EX31_RS01275at 283.980 kb on + strand, within EX31_RS01275at 284.099 kb on - strand, within EX31_RS01275at 284.208 kb on + strand, within EX31_RS01275at 284.208 kb on + strand, within EX31_RS01275at 284.364 kb on - strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.498 kb on - strandat 284.579 kb on - strand, within EX31_RS01280at 284.579 kb on - strand, within EX31_RS01280at 284.697 kb on + strand, within EX31_RS01280at 284.719 kb on + strand, within EX31_RS01280at 284.888 kb on + strandat 284.899 kb on + strandat 284.946 kb on + strandat 284.991 kb on - strand, within EX31_RS01285at 284.991 kb on - strand, within EX31_RS01285at 284.991 kb on - strand, within EX31_RS01285at 284.991 kb on - strand, within EX31_RS01285at 285.112 kb on + strand, within EX31_RS01285at 285.113 kb on - strand, within EX31_RS01285at 285.272 kb on + strand, within EX31_RS01285at 285.338 kb on + strand, within EX31_RS01285at 285.339 kb on - strand, within EX31_RS01285at 285.339 kb on - strand, within EX31_RS01285at 285.339 kb on - strand, within EX31_RS01285at 285.371 kb on + strand, within EX31_RS01285at 285.412 kb on + strand, within EX31_RS01285at 285.480 kb on - strand, within EX31_RS01285at 285.526 kb on + strand, within EX31_RS01285at 285.526 kb on + strand, within EX31_RS01285at 285.527 kb on - strand, within EX31_RS01285at 285.595 kb on - strandat 285.619 kb on + strandat 285.619 kb on + strandat 285.619 kb on + strandat 285.619 kb on + strandat 285.619 kb on + strandat 285.619 kb on + strandat 285.619 kb on + strandat 285.619 kb on + strandat 285.620 kb on - strandat 285.620 kb on - strandat 285.620 kb on - strandat 285.620 kb on - strandat 285.620 kb on - strandat 285.620 kb on - strandat 285.620 kb on - strandat 285.620 kb on - strandat 285.620 kb on - strandat 285.620 kb on - strandat 285.665 kb on + strandat 285.707 kb on - strandat 285.707 kb on - strandat 285.707 kb on - strandat 285.816 kb on + strandat 285.816 kb on + strandat 285.816 kb on + strandat 285.817 kb on - strandat 285.817 kb on - strandat 285.883 kb on - strand, within EX31_RS01290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
remove
283,531 + +1.9
283,585 + EX31_RS01275 0.12 +0.3
283,609 + EX31_RS01275 0.15 -0.9
283,609 + EX31_RS01275 0.15 -0.1
283,775 + EX31_RS01275 0.32 +1.4
283,775 + EX31_RS01275 0.32 -0.1
283,775 + EX31_RS01275 0.32 +0.4
283,775 + EX31_RS01275 0.32 +0.5
283,775 + EX31_RS01275 0.32 +0.7
283,775 + EX31_RS01275 0.32 -2.0
283,775 + EX31_RS01275 0.32 -0.6
283,775 + EX31_RS01275 0.32 -0.2
283,775 + EX31_RS01275 0.32 +0.9
283,775 + EX31_RS01275 0.32 -0.4
283,776 - EX31_RS01275 0.32 -0.1
283,776 - EX31_RS01275 0.32 +0.1
283,776 - EX31_RS01275 0.32 +0.4
283,777 + EX31_RS01275 0.32 +1.2
283,871 + EX31_RS01275 0.41 +2.4
283,871 + EX31_RS01275 0.41 +1.9
283,871 + EX31_RS01275 0.41 +0.6
283,871 + EX31_RS01275 0.41 -0.6
283,872 - EX31_RS01275 0.41 +1.1
283,872 - EX31_RS01275 0.41 -0.8
283,980 + EX31_RS01275 0.52 -0.3
284,099 - EX31_RS01275 0.64 -0.1
284,208 + EX31_RS01275 0.75 -0.1
284,208 + EX31_RS01275 0.75 -1.4
284,364 - +1.0
284,368 + -0.9
284,368 + +0.3
284,368 + -0.4
284,368 + -1.2
284,498 - +0.3
284,579 - EX31_RS01280 0.21 -1.1
284,579 - EX31_RS01280 0.21 +1.2
284,697 + EX31_RS01280 0.50 +0.1
284,719 + EX31_RS01280 0.56 -1.4
284,888 + +0.3
284,899 + +1.9
284,946 + +0.9
284,991 - EX31_RS01285 0.13 +1.0
284,991 - EX31_RS01285 0.13 -1.0
284,991 - EX31_RS01285 0.13 -0.5
284,991 - EX31_RS01285 0.13 +0.9
285,112 + EX31_RS01285 0.29 +0.9
285,113 - EX31_RS01285 0.30 +0.9
285,272 + EX31_RS01285 0.52 -0.6
285,338 + EX31_RS01285 0.61 -1.3
285,339 - EX31_RS01285 0.61 -0.5
285,339 - EX31_RS01285 0.61 -2.6
285,339 - EX31_RS01285 0.61 -1.3
285,371 + EX31_RS01285 0.65 +0.3
285,412 + EX31_RS01285 0.71 -0.1
285,480 - EX31_RS01285 0.80 +0.3
285,526 + EX31_RS01285 0.87 +0.9
285,526 + EX31_RS01285 0.87 +1.0
285,527 - EX31_RS01285 0.87 -1.1
285,595 - -1.5
285,619 + -0.1
285,619 + -0.3
285,619 + +0.3
285,619 + -0.5
285,619 + +1.9
285,619 + +0.9
285,619 + -0.3
285,619 + +0.3
285,620 - -1.6
285,620 - +0.9
285,620 - +0.4
285,620 - +1.5
285,620 - -1.0
285,620 - -0.8
285,620 - +1.0
285,620 - +0.7
285,620 - +0.9
285,620 - +0.6
285,665 + +0.9
285,707 - -0.3
285,707 - -1.4
285,707 - -0.1
285,816 + -0.4
285,816 + +0.2
285,816 + +0.4
285,817 - +1.9
285,817 - +0.2
285,883 - EX31_RS01290 0.17 -0.0

Or see this region's nucleotide sequence