Strain Fitness in Rahnella sp. WP5 around EX31_RS01075

Experiment: L-Serine (N); RCH2 media; shaking

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS01065 and EX31_RS01070 are separated by 14 nucleotidesEX31_RS01070 and EX31_RS01075 are separated by 259 nucleotidesEX31_RS01075 and EX31_RS01080 are separated by 187 nucleotides EX31_RS01065: EX31_RS01065 - glycine zipper family protein, at 233,551 to 234,090 _RS01065 EX31_RS01070: EX31_RS01070 - hypothetical protein, at 234,105 to 234,452 _RS01070 EX31_RS01075: EX31_RS01075 - manganese-binding transcriptional regulator MntR, at 234,712 to 235,155 _RS01075 EX31_RS01080: EX31_RS01080 - metal ABC transporter substrate-binding protein, at 235,343 to 236,284 _RS01080 Position (kb) 234 235 236Strain fitness (log2 ratio) -2 -1 0 1 2at 233.715 kb on - strand, within EX31_RS01065at 233.731 kb on - strand, within EX31_RS01065at 233.861 kb on - strand, within EX31_RS01065at 233.933 kb on + strand, within EX31_RS01065at 233.933 kb on + strand, within EX31_RS01065at 233.934 kb on - strand, within EX31_RS01065at 233.934 kb on - strand, within EX31_RS01065at 234.126 kb on + strandat 234.126 kb on + strandat 234.200 kb on - strand, within EX31_RS01070at 234.226 kb on + strand, within EX31_RS01070at 234.226 kb on + strand, within EX31_RS01070at 234.226 kb on + strand, within EX31_RS01070at 234.226 kb on + strand, within EX31_RS01070at 234.226 kb on + strand, within EX31_RS01070at 234.226 kb on + strand, within EX31_RS01070at 234.226 kb on + strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.227 kb on - strand, within EX31_RS01070at 234.248 kb on + strand, within EX31_RS01070at 234.248 kb on + strand, within EX31_RS01070at 234.248 kb on + strand, within EX31_RS01070at 234.249 kb on - strand, within EX31_RS01070at 234.254 kb on - strand, within EX31_RS01070at 234.275 kb on - strand, within EX31_RS01070at 234.277 kb on + strand, within EX31_RS01070at 234.277 kb on + strand, within EX31_RS01070at 234.278 kb on - strand, within EX31_RS01070at 234.346 kb on + strand, within EX31_RS01070at 234.346 kb on + strand, within EX31_RS01070at 234.347 kb on - strand, within EX31_RS01070at 234.349 kb on + strand, within EX31_RS01070at 234.361 kb on + strand, within EX31_RS01070at 234.362 kb on - strand, within EX31_RS01070at 234.379 kb on + strand, within EX31_RS01070at 234.380 kb on - strand, within EX31_RS01070at 234.452 kb on + strandat 234.453 kb on - strandat 234.493 kb on + strandat 234.493 kb on + strandat 234.494 kb on - strandat 234.522 kb on - strandat 234.708 kb on + strandat 234.828 kb on + strand, within EX31_RS01075at 234.841 kb on + strand, within EX31_RS01075at 234.842 kb on - strand, within EX31_RS01075at 234.916 kb on + strand, within EX31_RS01075at 234.970 kb on - strand, within EX31_RS01075at 235.034 kb on - strand, within EX31_RS01075at 235.034 kb on - strand, within EX31_RS01075at 235.034 kb on - strand, within EX31_RS01075at 235.034 kb on - strand, within EX31_RS01075at 235.034 kb on - strand, within EX31_RS01075at 235.034 kb on - strand, within EX31_RS01075at 235.056 kb on - strand, within EX31_RS01075at 235.056 kb on - strand, within EX31_RS01075at 235.056 kb on - strand, within EX31_RS01075at 235.056 kb on - strand, within EX31_RS01075at 235.067 kb on - strand, within EX31_RS01075at 235.067 kb on - strand, within EX31_RS01075at 235.097 kb on - strand, within EX31_RS01075at 235.130 kb on - strandat 235.157 kb on - strandat 235.187 kb on + strandat 235.200 kb on + strandat 235.201 kb on - strandat 235.224 kb on + strandat 235.224 kb on + strandat 235.224 kb on + strandat 235.225 kb on - strandat 235.233 kb on + strandat 235.233 kb on + strandat 235.233 kb on + strandat 235.233 kb on + strandat 235.234 kb on - strandat 235.234 kb on - strandat 235.234 kb on - strandat 235.234 kb on - strandat 235.234 kb on - strandat 235.244 kb on - strandat 235.280 kb on + strandat 235.290 kb on + strandat 235.292 kb on + strandat 235.292 kb on + strandat 235.303 kb on + strandat 235.371 kb on + strandat 235.379 kb on + strandat 235.543 kb on - strand, within EX31_RS01080at 235.645 kb on + strand, within EX31_RS01080at 235.732 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.748 kb on + strand, within EX31_RS01080at 235.749 kb on - strand, within EX31_RS01080at 235.802 kb on + strand, within EX31_RS01080at 235.802 kb on + strand, within EX31_RS01080at 235.835 kb on + strand, within EX31_RS01080at 235.860 kb on - strand, within EX31_RS01080at 235.874 kb on - strand, within EX31_RS01080at 235.982 kb on + strand, within EX31_RS01080at 235.997 kb on + strand, within EX31_RS01080at 236.015 kb on + strand, within EX31_RS01080at 236.015 kb on + strand, within EX31_RS01080at 236.015 kb on + strand, within EX31_RS01080

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
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233,715 - EX31_RS01065 0.30 -0.8
233,731 - EX31_RS01065 0.33 +0.1
233,861 - EX31_RS01065 0.57 -0.4
233,933 + EX31_RS01065 0.71 -1.2
233,933 + EX31_RS01065 0.71 -2.1
233,934 - EX31_RS01065 0.71 +0.9
233,934 - EX31_RS01065 0.71 -1.6
234,126 + -1.4
234,126 + -0.1
234,200 - EX31_RS01070 0.27 -0.7
234,226 + EX31_RS01070 0.35 +0.4
234,226 + EX31_RS01070 0.35 +1.4
234,226 + EX31_RS01070 0.35 -1.3
234,226 + EX31_RS01070 0.35 +0.8
234,226 + EX31_RS01070 0.35 +0.4
234,226 + EX31_RS01070 0.35 +0.9
234,226 + EX31_RS01070 0.35 -0.3
234,227 - EX31_RS01070 0.35 -0.5
234,227 - EX31_RS01070 0.35 +0.9
234,227 - EX31_RS01070 0.35 -1.4
234,227 - EX31_RS01070 0.35 -0.1
234,227 - EX31_RS01070 0.35 -1.0
234,227 - EX31_RS01070 0.35 -0.3
234,227 - EX31_RS01070 0.35 +0.9
234,227 - EX31_RS01070 0.35 -0.7
234,227 - EX31_RS01070 0.35 +1.1
234,227 - EX31_RS01070 0.35 -0.2
234,227 - EX31_RS01070 0.35 +1.0
234,248 + EX31_RS01070 0.41 +0.4
234,248 + EX31_RS01070 0.41 +1.3
234,248 + EX31_RS01070 0.41 +0.3
234,249 - EX31_RS01070 0.41 +0.3
234,254 - EX31_RS01070 0.43 +0.7
234,275 - EX31_RS01070 0.49 -1.2
234,277 + EX31_RS01070 0.49 +0.5
234,277 + EX31_RS01070 0.49 +0.6
234,278 - EX31_RS01070 0.50 -1.2
234,346 + EX31_RS01070 0.69 -0.3
234,346 + EX31_RS01070 0.69 -0.6
234,347 - EX31_RS01070 0.70 +0.2
234,349 + EX31_RS01070 0.70 +0.3
234,361 + EX31_RS01070 0.74 -0.2
234,362 - EX31_RS01070 0.74 -0.3
234,379 + EX31_RS01070 0.79 -0.2
234,380 - EX31_RS01070 0.79 +0.6
234,452 + -2.5
234,453 - -1.5
234,493 + -1.1
234,493 + -0.0
234,494 - +2.7
234,522 - -0.3
234,708 + -0.9
234,828 + EX31_RS01075 0.26 -1.7
234,841 + EX31_RS01075 0.29 +0.0
234,842 - EX31_RS01075 0.29 -0.3
234,916 + EX31_RS01075 0.46 -0.7
234,970 - EX31_RS01075 0.58 -0.4
235,034 - EX31_RS01075 0.73 -0.6
235,034 - EX31_RS01075 0.73 -0.5
235,034 - EX31_RS01075 0.73 +0.2
235,034 - EX31_RS01075 0.73 +0.2
235,034 - EX31_RS01075 0.73 -0.1
235,034 - EX31_RS01075 0.73 -0.1
235,056 - EX31_RS01075 0.77 -0.9
235,056 - EX31_RS01075 0.77 -0.6
235,056 - EX31_RS01075 0.77 +0.3
235,056 - EX31_RS01075 0.77 -0.5
235,067 - EX31_RS01075 0.80 +0.3
235,067 - EX31_RS01075 0.80 -0.7
235,097 - EX31_RS01075 0.87 -2.0
235,130 - -1.8
235,157 - +0.0
235,187 + -0.6
235,200 + +0.3
235,201 - -0.3
235,224 + +0.0
235,224 + -0.7
235,224 + -1.0
235,225 - -0.6
235,233 + -1.1
235,233 + +1.3
235,233 + +0.5
235,233 + +0.1
235,234 - +0.2
235,234 - -1.3
235,234 - -0.3
235,234 - +0.7
235,234 - -0.0
235,244 - +1.8
235,280 + +0.4
235,290 + -0.3
235,292 + -0.6
235,292 + +1.7
235,303 + +1.4
235,371 + +0.3
235,379 + -0.3
235,543 - EX31_RS01080 0.21 -0.7
235,645 + EX31_RS01080 0.32 +0.6
235,732 + EX31_RS01080 0.41 +0.7
235,748 + EX31_RS01080 0.43 -1.3
235,748 + EX31_RS01080 0.43 +0.0
235,748 + EX31_RS01080 0.43 -0.5
235,748 + EX31_RS01080 0.43 +0.2
235,748 + EX31_RS01080 0.43 -0.2
235,749 - EX31_RS01080 0.43 +2.4
235,802 + EX31_RS01080 0.49 +1.2
235,802 + EX31_RS01080 0.49 +0.6
235,835 + EX31_RS01080 0.52 -0.5
235,860 - EX31_RS01080 0.55 +1.4
235,874 - EX31_RS01080 0.56 +2.3
235,982 + EX31_RS01080 0.68 +0.1
235,997 + EX31_RS01080 0.69 -0.8
236,015 + EX31_RS01080 0.71 -0.3
236,015 + EX31_RS01080 0.71 +0.2
236,015 + EX31_RS01080 0.71 -1.4

Or see this region's nucleotide sequence