Strain Fitness in Rahnella sp. WP5 around EX31_RS00525

Experiment: L-Serine (N); RCH2 media; shaking

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Serine (N); RCH2 media; shaking
113,602	+		EX31_RS00515	0.53	+0.4
113,603	-		EX31_RS00515	0.54	+0.4
113,606	+		EX31_RS00515	0.54	+0.5
113,606	+		EX31_RS00515	0.54	-0.4
113,606	+		EX31_RS00515	0.54	+0.6
113,608	+		EX31_RS00515	0.54	+0.1
113,608	+		EX31_RS00515	0.54	+1.6
113,608	+		EX31_RS00515	0.54	+0.7
113,608	+		EX31_RS00515	0.54	+0.2
113,608	+		EX31_RS00515	0.54	-1.6
113,608	+		EX31_RS00515	0.54	-0.2
113,621	+		EX31_RS00515	0.56	-0.6
113,621	+		EX31_RS00515	0.56	+0.9
113,621	+		EX31_RS00515	0.56	+0.3
113,621	+		EX31_RS00515	0.56	-0.4
113,621	+		EX31_RS00515	0.56	-0.6
113,621	+		EX31_RS00515	0.56	+0.7
113,621	+		EX31_RS00515	0.56	+0.5
113,621	+		EX31_RS00515	0.56	-2.7
113,621	+		EX31_RS00515	0.56	-0.5
113,621	+		EX31_RS00515	0.56	+0.1
113,621	+		EX31_RS00515	0.56	-1.0
113,621	+		EX31_RS00515	0.56	-0.0
113,621	+		EX31_RS00515	0.56	-0.1
113,621	+		EX31_RS00515	0.56	-0.3
113,621	+		EX31_RS00515	0.56	+2.4
113,622	-		EX31_RS00515	0.56	-1.9
113,622	-		EX31_RS00515	0.56	+1.1
113,622	-		EX31_RS00515	0.56	-1.2
113,622	-		EX31_RS00515	0.56	+0.5
113,741	+		EX31_RS00515	0.70	+0.4
113,741	+		EX31_RS00515	0.70	+0.7
113,741	+		EX31_RS00515	0.70	+0.8
113,745	+		EX31_RS00515	0.71	-0.7
113,745	+		EX31_RS00515	0.71	+1.6
113,745	+		EX31_RS00515	0.71	-0.4
113,745	+		EX31_RS00515	0.71	-0.0
113,769	+		EX31_RS00515	0.74	+1.1
113,770	-		EX31_RS00515	0.74	-0.4
113,864	+		EX31_RS00515	0.86	+0.3
113,864	+		EX31_RS00515	0.86	-0.3
113,864	+		EX31_RS00515	0.86	+0.5
113,865	-		EX31_RS00515	0.86	+1.6
113,934	+				+0.2
113,934	+				+0.7
113,934	+				+2.0
113,934	+				-1.2
113,935	-				-1.2
113,971	+				+0.6
113,974	+				+0.7
113,974	+				-0.4
113,974	+				+0.7
113,974	+				+0.6
113,974	+				+0.5
113,975	-				-0.0
113,975	-				+0.6
113,994	+				-0.4
114,080	-		EX31_RS00520	0.20	-1.0
114,121	+		EX31_RS00520	0.28	-0.6
114,121	+		EX31_RS00520	0.28	+0.0
114,121	+		EX31_RS00520	0.28	+1.6
114,121	+		EX31_RS00520	0.28	-1.1
114,122	-		EX31_RS00520	0.28	-0.6
114,139	-		EX31_RS00520	0.32	+0.2
114,207	+		EX31_RS00520	0.46	-0.7
114,217	+		EX31_RS00520	0.48	+2.0
114,217	+		EX31_RS00520	0.48	-1.4
114,225	+		EX31_RS00520	0.50	+0.4
114,308	+		EX31_RS00520	0.67	+0.2
114,412	+		EX31_RS00520	0.89	+0.4
114,412	+		EX31_RS00520	0.89	-2.0
114,412	+		EX31_RS00520	0.89	-1.5
114,412	+		EX31_RS00520	0.89	-1.7
114,414	+		EX31_RS00520	0.89	-0.3
114,414	+		EX31_RS00520	0.89	-0.3
114,463	+				-1.0
114,517	-				-0.4
114,526	+				+0.4
114,527	-				-0.4
114,548	+				+0.6
114,580	+				-2.5
114,580	+				+1.3
114,580	+				-1.4
114,581	-				+0.5
114,581	-				+0.7
114,581	-				+1.1
114,581	-				-1.2
114,581	-				-0.3
114,581	-				+0.9
114,581	-				+0.0
114,581	-				-0.4
114,581	-				+0.5
114,581	-				+1.0
114,614	-		EX31_RS00525	0.12	-2.4
114,614	-		EX31_RS00525	0.12	-0.0
114,689	+		EX31_RS00525	0.21	+0.1
114,689	+		EX31_RS00525	0.21	+0.5
114,690	-		EX31_RS00525	0.21	+1.4
114,690	-		EX31_RS00525	0.21	-0.2
114,690	-		EX31_RS00525	0.21	+0.4
114,690	-		EX31_RS00525	0.21	-0.1
114,690	-		EX31_RS00525	0.21	-0.2
114,733	-		EX31_RS00525	0.26	-0.6
114,759	+		EX31_RS00525	0.30	-1.4
114,786	+		EX31_RS00525	0.33	-1.0
114,787	-		EX31_RS00525	0.33	+0.1
114,870	-		EX31_RS00525	0.44	-0.8
114,870	-		EX31_RS00525	0.44	+0.4
114,900	+		EX31_RS00525	0.47	-0.0
114,900	+		EX31_RS00525	0.47	-0.2
114,901	-		EX31_RS00525	0.47	-0.1
114,901	-		EX31_RS00525	0.47	+0.4
114,901	-		EX31_RS00525	0.47	-0.8
114,948	+		EX31_RS00525	0.53	-2.0
114,951	+		EX31_RS00525	0.54	-0.6
114,951	+		EX31_RS00525	0.54	+0.4
114,952	-		EX31_RS00525	0.54	+1.0
114,952	-		EX31_RS00525	0.54	+1.0
114,952	-		EX31_RS00525	0.54	-0.0
114,952	-		EX31_RS00525	0.54	-1.5
114,955	+		EX31_RS00525	0.54	-0.6
114,956	-		EX31_RS00525	0.54	-0.5
114,956	-		EX31_RS00525	0.54	+0.4
114,956	-		EX31_RS00525	0.54	+0.3
114,956	-		EX31_RS00525	0.54	+1.3
114,956	-		EX31_RS00525	0.54	+0.0
115,195	-		EX31_RS00525	0.84	-1.1
115,195	-		EX31_RS00525	0.84	-1.3
115,250	-				-1.6
115,283	-				-0.1
115,297	-				+0.4
115,297	-				-1.0
115,368	-		EX31_RS00530	0.21	-0.5
115,368	-		EX31_RS00530	0.21	-1.3
115,437	-		EX31_RS00530	0.48	-1.0
115,506	-		EX31_RS00530	0.75	+0.6
115,506	-		EX31_RS00530	0.75	-0.0
115,506	-		EX31_RS00530	0.75	-0.3
115,506	-		EX31_RS00530	0.75	-0.4
115,506	-		EX31_RS00530	0.75	+0.9
115,507	+		EX31_RS00530	0.76	-0.5
115,508	-		EX31_RS00530	0.76	+0.5
115,508	-		EX31_RS00530	0.76	+0.7
115,508	-		EX31_RS00530	0.76	-1.0
115,508	-		EX31_RS00530	0.76	-1.0
115,508	-		EX31_RS00530	0.76	-0.9
115,508	-		EX31_RS00530	0.76	-0.6
115,563	-				-0.1
115,563	-				+0.3
115,597	-				-1.8
115,599	-				+1.0
115,609	+				+0.6
115,742	+				+0.9
115,742	+				-1.4
115,742	+				+2.0
115,742	+				-1.5
115,742	+				+2.0
115,742	+				-0.7
115,742	+				+1.0
115,742	+				+0.4
115,742	+				+0.1
115,742	+				-0.0
115,743	-				-1.1
115,743	-				+2.0
115,743	-				+0.8
115,743	-				+0.2
115,743	-				+0.6
115,743	-				+1.2
115,747	+				+0.2
115,748	-				-1.6
115,751	+				+1.2
115,752	-				+0.6
115,862	+		EX31_RS00535	0.34	+0.4
115,863	-		EX31_RS00535	0.35	-0.1
115,937	+		EX31_RS00535	0.54	+1.0
115,958	+		EX31_RS00535	0.59	+0.6
115,964	+		EX31_RS00535	0.61	-0.5
115,965	-		EX31_RS00535	0.61	-0.6
115,967	+		EX31_RS00535	0.61	-0.2
115,967	+		EX31_RS00535	0.61	+0.2
115,967	+		EX31_RS00535	0.61	-0.0
115,967	+		EX31_RS00535	0.61	-1.1
115,968	-		EX31_RS00535	0.62	+0.1
115,968	-		EX31_RS00535	0.62	+0.2
115,968	-		EX31_RS00535	0.62	+0.6
115,971	+		EX31_RS00535	0.62	+1.3
115,971	+		EX31_RS00535	0.62	+0.8
115,971	+		EX31_RS00535	0.62	+0.2
115,971	+		EX31_RS00535	0.62	+0.3
115,972	-		EX31_RS00535	0.63	+2.0
115,994	+		EX31_RS00535	0.68	+1.0
115,994	+		EX31_RS00535	0.68	+0.9
115,994	+		EX31_RS00535	0.68	+1.0
115,994	+		EX31_RS00535	0.68	+0.8
115,994	+		EX31_RS00535	0.68	-1.0
115,994	+		EX31_RS00535	0.68	+1.6
115,994	+		EX31_RS00535	0.68	+1.1
115,995	-		EX31_RS00535	0.68	+0.4
115,995	-		EX31_RS00535	0.68	+0.4
115,995	-		EX31_RS00535	0.68	+0.2
115,998	+		EX31_RS00535	0.69	+0.1
116,049	+		EX31_RS00535	0.82	-0.5
116,050	-		EX31_RS00535	0.83	+0.3
116,082	-				-1.8
116,115	+				-0.1
116,127	-				+0.1
116,148	+				-0.2
116,158	+				+0.4
116,159	-				+2.1
116,195	+				+0.4
116,196	-				-0.0
116,319	+		EX31_RS00540	0.38	-0.4