Strain Fitness in Rahnella sp. WP5 around EX31_RS00305

Experiment: L-Serine (N); RCH2 media; shaking

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS00295 and EX31_RS00300 are separated by 17 nucleotidesEX31_RS00300 and EX31_RS00305 overlap by 4 nucleotidesEX31_RS00305 and EX31_RS00310 are separated by 231 nucleotides EX31_RS00295: EX31_RS00295 - SDR family oxidoreductase, at 63,654 to 64,397 _RS00295 EX31_RS00300: EX31_RS00300 - extradiol dioxygenase, at 64,415 to 64,819 _RS00300 EX31_RS00305: EX31_RS00305 - NAD(P)H-binding protein, at 64,816 to 65,799 _RS00305 EX31_RS00310: EX31_RS00310 - LysR family transcriptional regulator, at 66,031 to 66,912 _RS00310 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1 2at 63.854 kb on + strand, within EX31_RS00295at 63.880 kb on + strand, within EX31_RS00295at 63.880 kb on + strand, within EX31_RS00295at 63.880 kb on + strand, within EX31_RS00295at 63.880 kb on + strand, within EX31_RS00295at 63.920 kb on - strand, within EX31_RS00295at 64.004 kb on + strand, within EX31_RS00295at 64.116 kb on + strand, within EX31_RS00295at 64.116 kb on + strand, within EX31_RS00295at 64.116 kb on + strand, within EX31_RS00295at 64.145 kb on - strand, within EX31_RS00295at 64.155 kb on + strand, within EX31_RS00295at 64.155 kb on + strand, within EX31_RS00295at 64.156 kb on - strand, within EX31_RS00295at 64.157 kb on + strand, within EX31_RS00295at 64.199 kb on + strand, within EX31_RS00295at 64.200 kb on - strand, within EX31_RS00295at 64.309 kb on + strand, within EX31_RS00295at 64.309 kb on + strand, within EX31_RS00295at 64.309 kb on + strand, within EX31_RS00295at 64.309 kb on + strand, within EX31_RS00295at 64.310 kb on - strand, within EX31_RS00295at 64.310 kb on - strand, within EX31_RS00295at 64.310 kb on - strand, within EX31_RS00295at 64.310 kb on - strand, within EX31_RS00295at 64.310 kb on - strand, within EX31_RS00295at 64.313 kb on + strand, within EX31_RS00295at 64.314 kb on - strand, within EX31_RS00295at 64.395 kb on + strandat 64.414 kb on + strandat 64.426 kb on + strandat 64.426 kb on + strandat 64.514 kb on + strand, within EX31_RS00300at 64.515 kb on - strand, within EX31_RS00300at 64.643 kb on - strand, within EX31_RS00300at 64.667 kb on + strand, within EX31_RS00300at 64.667 kb on + strand, within EX31_RS00300at 64.724 kb on + strand, within EX31_RS00300at 64.725 kb on - strand, within EX31_RS00300at 64.725 kb on - strand, within EX31_RS00300at 64.725 kb on - strand, within EX31_RS00300at 64.725 kb on - strand, within EX31_RS00300at 64.727 kb on + strand, within EX31_RS00300at 64.728 kb on - strand, within EX31_RS00300at 64.742 kb on + strand, within EX31_RS00300at 64.742 kb on + strand, within EX31_RS00300at 64.742 kb on + strand, within EX31_RS00300at 64.742 kb on + strand, within EX31_RS00300at 64.742 kb on + strand, within EX31_RS00300at 64.742 kb on + strand, within EX31_RS00300at 64.742 kb on + strand, within EX31_RS00300at 64.743 kb on - strand, within EX31_RS00300at 64.743 kb on - strand, within EX31_RS00300at 64.793 kb on - strandat 64.826 kb on + strandat 64.826 kb on + strandat 64.826 kb on + strandat 64.827 kb on - strandat 64.827 kb on - strandat 64.830 kb on + strandat 64.831 kb on - strandat 65.006 kb on + strand, within EX31_RS00305at 65.024 kb on + strand, within EX31_RS00305at 65.024 kb on + strand, within EX31_RS00305at 65.024 kb on + strand, within EX31_RS00305at 65.082 kb on + strand, within EX31_RS00305at 65.098 kb on + strand, within EX31_RS00305at 65.098 kb on + strand, within EX31_RS00305at 65.106 kb on + strand, within EX31_RS00305at 65.420 kb on + strand, within EX31_RS00305at 65.421 kb on - strand, within EX31_RS00305at 65.421 kb on - strand, within EX31_RS00305at 65.494 kb on + strand, within EX31_RS00305at 65.494 kb on + strand, within EX31_RS00305at 65.494 kb on + strand, within EX31_RS00305at 65.495 kb on - strand, within EX31_RS00305at 65.534 kb on + strand, within EX31_RS00305at 65.578 kb on - strand, within EX31_RS00305at 65.664 kb on + strand, within EX31_RS00305at 65.665 kb on - strand, within EX31_RS00305at 65.703 kb on + strandat 65.792 kb on + strandat 65.804 kb on + strandat 65.804 kb on + strandat 65.804 kb on + strandat 65.823 kb on + strandat 65.824 kb on - strandat 65.869 kb on + strandat 65.870 kb on - strandat 65.946 kb on + strandat 65.960 kb on + strandat 65.960 kb on + strandat 65.963 kb on - strandat 65.963 kb on - strandat 65.963 kb on - strandat 65.994 kb on - strandat 66.130 kb on - strand, within EX31_RS00310at 66.224 kb on - strand, within EX31_RS00310at 66.224 kb on - strand, within EX31_RS00310at 66.267 kb on + strand, within EX31_RS00310at 66.267 kb on + strand, within EX31_RS00310at 66.268 kb on - strand, within EX31_RS00310at 66.268 kb on - strand, within EX31_RS00310at 66.361 kb on + strand, within EX31_RS00310at 66.361 kb on + strand, within EX31_RS00310at 66.361 kb on + strand, within EX31_RS00310at 66.361 kb on + strand, within EX31_RS00310at 66.362 kb on - strand, within EX31_RS00310at 66.362 kb on - strand, within EX31_RS00310at 66.488 kb on - strand, within EX31_RS00310at 66.530 kb on - strand, within EX31_RS00310at 66.549 kb on + strand, within EX31_RS00310at 66.623 kb on + strand, within EX31_RS00310at 66.623 kb on + strand, within EX31_RS00310at 66.623 kb on + strand, within EX31_RS00310at 66.623 kb on + strand, within EX31_RS00310at 66.624 kb on - strand, within EX31_RS00310at 66.624 kb on - strand, within EX31_RS00310at 66.624 kb on - strand, within EX31_RS00310at 66.624 kb on - strand, within EX31_RS00310at 66.624 kb on - strand, within EX31_RS00310at 66.624 kb on - strand, within EX31_RS00310at 66.624 kb on - strand, within EX31_RS00310at 66.624 kb on - strand, within EX31_RS00310at 66.628 kb on + strand, within EX31_RS00310at 66.629 kb on - strand, within EX31_RS00310at 66.629 kb on - strand, within EX31_RS00310at 66.629 kb on - strand, within EX31_RS00310at 66.629 kb on - strand, within EX31_RS00310at 66.724 kb on + strand, within EX31_RS00310at 66.725 kb on - strand, within EX31_RS00310at 66.773 kb on - strand, within EX31_RS00310

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N); RCH2 media; shaking
remove
63,854 + EX31_RS00295 0.27 +0.8
63,880 + EX31_RS00295 0.30 +1.3
63,880 + EX31_RS00295 0.30 +0.1
63,880 + EX31_RS00295 0.30 -0.4
63,880 + EX31_RS00295 0.30 +0.1
63,920 - EX31_RS00295 0.36 -0.5
64,004 + EX31_RS00295 0.47 -0.6
64,116 + EX31_RS00295 0.62 +1.2
64,116 + EX31_RS00295 0.62 -0.9
64,116 + EX31_RS00295 0.62 +1.0
64,145 - EX31_RS00295 0.66 -0.6
64,155 + EX31_RS00295 0.67 +0.7
64,155 + EX31_RS00295 0.67 -0.1
64,156 - EX31_RS00295 0.67 -1.6
64,157 + EX31_RS00295 0.68 +1.0
64,199 + EX31_RS00295 0.73 +0.5
64,200 - EX31_RS00295 0.73 +0.2
64,309 + EX31_RS00295 0.88 -1.4
64,309 + EX31_RS00295 0.88 +0.6
64,309 + EX31_RS00295 0.88 -0.4
64,309 + EX31_RS00295 0.88 +0.6
64,310 - EX31_RS00295 0.88 +0.6
64,310 - EX31_RS00295 0.88 -0.7
64,310 - EX31_RS00295 0.88 -0.0
64,310 - EX31_RS00295 0.88 +0.8
64,310 - EX31_RS00295 0.88 +0.1
64,313 + EX31_RS00295 0.89 +0.9
64,314 - EX31_RS00295 0.89 -1.2
64,395 + -0.0
64,414 + -0.4
64,426 + +2.0
64,426 + +0.3
64,514 + EX31_RS00300 0.24 -0.0
64,515 - EX31_RS00300 0.25 +0.2
64,643 - EX31_RS00300 0.56 -1.2
64,667 + EX31_RS00300 0.62 +0.3
64,667 + EX31_RS00300 0.62 -1.9
64,724 + EX31_RS00300 0.76 -1.6
64,725 - EX31_RS00300 0.77 +0.4
64,725 - EX31_RS00300 0.77 +0.9
64,725 - EX31_RS00300 0.77 +0.6
64,725 - EX31_RS00300 0.77 +0.2
64,727 + EX31_RS00300 0.77 -0.6
64,728 - EX31_RS00300 0.77 +2.6
64,742 + EX31_RS00300 0.81 +0.8
64,742 + EX31_RS00300 0.81 +1.5
64,742 + EX31_RS00300 0.81 -0.0
64,742 + EX31_RS00300 0.81 +2.0
64,742 + EX31_RS00300 0.81 +1.3
64,742 + EX31_RS00300 0.81 -0.0
64,742 + EX31_RS00300 0.81 +1.0
64,743 - EX31_RS00300 0.81 +1.8
64,743 - EX31_RS00300 0.81 +0.6
64,793 - -1.3
64,826 + -0.0
64,826 + -0.3
64,826 + -0.7
64,827 - +0.4
64,827 - +0.5
64,830 + +0.7
64,831 - -1.4
65,006 + EX31_RS00305 0.19 +1.0
65,024 + EX31_RS00305 0.21 -0.6
65,024 + EX31_RS00305 0.21 -1.0
65,024 + EX31_RS00305 0.21 -0.4
65,082 + EX31_RS00305 0.27 -0.8
65,098 + EX31_RS00305 0.29 -0.8
65,098 + EX31_RS00305 0.29 +0.6
65,106 + EX31_RS00305 0.29 -1.3
65,420 + EX31_RS00305 0.61 -0.5
65,421 - EX31_RS00305 0.61 -0.8
65,421 - EX31_RS00305 0.61 +0.6
65,494 + EX31_RS00305 0.69 -0.8
65,494 + EX31_RS00305 0.69 -2.5
65,494 + EX31_RS00305 0.69 +0.2
65,495 - EX31_RS00305 0.69 -0.0
65,534 + EX31_RS00305 0.73 -1.5
65,578 - EX31_RS00305 0.77 +0.4
65,664 + EX31_RS00305 0.86 +1.0
65,665 - EX31_RS00305 0.86 -0.8
65,703 + -1.4
65,792 + +1.8
65,804 + +0.6
65,804 + +0.6
65,804 + -0.5
65,823 + -0.2
65,824 - +0.1
65,869 + -1.0
65,870 - -0.4
65,946 + +1.2
65,960 + -0.8
65,960 + +0.3
65,963 - +0.4
65,963 - -1.0
65,963 - +0.4
65,994 - +1.4
66,130 - EX31_RS00310 0.11 -0.8
66,224 - EX31_RS00310 0.22 -1.7
66,224 - EX31_RS00310 0.22 +0.3
66,267 + EX31_RS00310 0.27 +0.6
66,267 + EX31_RS00310 0.27 +2.0
66,268 - EX31_RS00310 0.27 -0.8
66,268 - EX31_RS00310 0.27 +1.3
66,361 + EX31_RS00310 0.37 +2.4
66,361 + EX31_RS00310 0.37 +1.0
66,361 + EX31_RS00310 0.37 -0.4
66,361 + EX31_RS00310 0.37 -1.6
66,362 - EX31_RS00310 0.38 +0.6
66,362 - EX31_RS00310 0.38 -1.8
66,488 - EX31_RS00310 0.52 +0.3
66,530 - EX31_RS00310 0.57 +0.1
66,549 + EX31_RS00310 0.59 -1.2
66,623 + EX31_RS00310 0.67 -0.4
66,623 + EX31_RS00310 0.67 -0.8
66,623 + EX31_RS00310 0.67 -0.4
66,623 + EX31_RS00310 0.67 +1.5
66,624 - EX31_RS00310 0.67 +0.2
66,624 - EX31_RS00310 0.67 -0.5
66,624 - EX31_RS00310 0.67 +1.6
66,624 - EX31_RS00310 0.67 -0.8
66,624 - EX31_RS00310 0.67 -1.2
66,624 - EX31_RS00310 0.67 -0.3
66,624 - EX31_RS00310 0.67 -0.2
66,624 - EX31_RS00310 0.67 -0.4
66,628 + EX31_RS00310 0.68 +0.2
66,629 - EX31_RS00310 0.68 +2.0
66,629 - EX31_RS00310 0.68 +0.6
66,629 - EX31_RS00310 0.68 -0.5
66,629 - EX31_RS00310 0.68 -0.6
66,724 + EX31_RS00310 0.79 +0.5
66,725 - EX31_RS00310 0.79 -1.0
66,773 - EX31_RS00310 0.84 +1.6

Or see this region's nucleotide sequence