Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22550 and CA265_RS22555 overlap by 1 nucleotides CA265_RS22555 and CA265_RS22560 are separated by 11 nucleotides CA265_RS22560 and CA265_RS22565 are separated by 71 nucleotides
CA265_RS22550: CA265_RS22550 - hypothetical protein, at 5,525,972 to 5,527,030
_RS22550
CA265_RS22555: CA265_RS22555 - lipoyl(octanoyl) transferase, at 5,527,030 to 5,527,758
_RS22555
CA265_RS22560: CA265_RS22560 - 4'-phosphopantetheinyl transferase, at 5,527,770 to 5,528,417
_RS22560
CA265_RS22565: CA265_RS22565 - dCTP deaminase, at 5,528,489 to 5,529,025
_RS22565
Position (kb) 5527
5528
5529 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5526.778 kb on + strand, within CA265_RS22550 at 5526.779 kb on - strand, within CA265_RS22550 at 5526.882 kb on + strand, within CA265_RS22550 at 5526.883 kb on - strand, within CA265_RS22550 at 5526.890 kb on + strand, within CA265_RS22550 at 5526.914 kb on + strand, within CA265_RS22550 at 5526.915 kb on - strand, within CA265_RS22550 at 5526.991 kb on + strand at 5526.991 kb on + strand at 5526.991 kb on + strand at 5526.991 kb on + strand at 5527.002 kb on - strand at 5527.031 kb on + strand at 5527.767 kb on - strand at 5527.785 kb on + strand at 5527.785 kb on + strand at 5527.795 kb on - strand at 5528.434 kb on + strand at 5528.455 kb on + strand at 5528.463 kb on - strand at 5528.569 kb on - strand, within CA265_RS22565 at 5528.603 kb on + strand, within CA265_RS22565 at 5528.611 kb on + strand, within CA265_RS22565 at 5528.617 kb on + strand, within CA265_RS22565 at 5528.618 kb on - strand, within CA265_RS22565 at 5528.675 kb on - strand, within CA265_RS22565 at 5528.685 kb on - strand, within CA265_RS22565 at 5528.685 kb on - strand, within CA265_RS22565 at 5528.686 kb on + strand, within CA265_RS22565 at 5528.686 kb on + strand, within CA265_RS22565 at 5528.686 kb on + strand, within CA265_RS22565 at 5528.686 kb on + strand, within CA265_RS22565 at 5528.687 kb on - strand, within CA265_RS22565 at 5528.707 kb on - strand, within CA265_RS22565 at 5528.724 kb on + strand, within CA265_RS22565 at 5528.729 kb on + strand, within CA265_RS22565 at 5528.751 kb on + strand, within CA265_RS22565 at 5528.767 kb on + strand, within CA265_RS22565 at 5528.767 kb on + strand, within CA265_RS22565 at 5528.776 kb on + strand, within CA265_RS22565 at 5528.815 kb on + strand, within CA265_RS22565 at 5528.837 kb on - strand, within CA265_RS22565 at 5528.945 kb on + strand, within CA265_RS22565 at 5528.946 kb on - strand, within CA265_RS22565 at 5528.965 kb on + strand, within CA265_RS22565 at 5528.965 kb on + strand, within CA265_RS22565 at 5528.965 kb on + strand, within CA265_RS22565 at 5528.966 kb on - strand, within CA265_RS22565 at 5528.969 kb on + strand, within CA265_RS22565 at 5528.977 kb on + strand at 5528.978 kb on - strand at 5529.017 kb on - strand at 5529.085 kb on + strand at 5529.086 kb on - strand at 5529.106 kb on + strand at 5529.156 kb on - strand at 5529.220 kb on + strand at 5529.220 kb on + strand at 5529.331 kb on + strand at 5529.332 kb on - strand at 5529.332 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,526,778 + CA265_RS22550 0.76 +0.4 5,526,779 - CA265_RS22550 0.76 +0.0 5,526,882 + CA265_RS22550 0.86 +1.4 5,526,883 - CA265_RS22550 0.86 +0.7 5,526,890 + CA265_RS22550 0.87 -0.1 5,526,914 + CA265_RS22550 0.89 -0.4 5,526,915 - CA265_RS22550 0.89 +0.1 5,526,991 + -0.4 5,526,991 + +0.5 5,526,991 + -1.1 5,526,991 + -0.1 5,527,002 - +0.6 5,527,031 + +0.4 5,527,767 - +0.2 5,527,785 + +0.5 5,527,785 + +0.6 5,527,795 - +0.1 5,528,434 + -0.3 5,528,455 + +0.0 5,528,463 - -0.6 5,528,569 - CA265_RS22565 0.15 -0.4 5,528,603 + CA265_RS22565 0.21 +0.4 5,528,611 + CA265_RS22565 0.23 -0.3 5,528,617 + CA265_RS22565 0.24 -0.5 5,528,618 - CA265_RS22565 0.24 -1.1 5,528,675 - CA265_RS22565 0.35 -1.5 5,528,685 - CA265_RS22565 0.36 -1.3 5,528,685 - CA265_RS22565 0.36 -0.1 5,528,686 + CA265_RS22565 0.37 -0.6 5,528,686 + CA265_RS22565 0.37 -1.5 5,528,686 + CA265_RS22565 0.37 -1.8 5,528,686 + CA265_RS22565 0.37 -1.5 5,528,687 - CA265_RS22565 0.37 +0.2 5,528,707 - CA265_RS22565 0.41 +0.4 5,528,724 + CA265_RS22565 0.44 -1.9 5,528,729 + CA265_RS22565 0.45 +0.2 5,528,751 + CA265_RS22565 0.49 +1.6 5,528,767 + CA265_RS22565 0.52 -0.1 5,528,767 + CA265_RS22565 0.52 -0.2 5,528,776 + CA265_RS22565 0.53 -0.2 5,528,815 + CA265_RS22565 0.61 -0.6 5,528,837 - CA265_RS22565 0.65 -0.5 5,528,945 + CA265_RS22565 0.85 -0.4 5,528,946 - CA265_RS22565 0.85 -0.1 5,528,965 + CA265_RS22565 0.89 -3.2 5,528,965 + CA265_RS22565 0.89 -0.3 5,528,965 + CA265_RS22565 0.89 -0.1 5,528,966 - CA265_RS22565 0.89 -0.6 5,528,969 + CA265_RS22565 0.89 -0.7 5,528,977 + +0.3 5,528,978 - +0.5 5,529,017 - +0.2 5,529,085 + -1.2 5,529,086 - -0.0 5,529,106 + +2.3 5,529,156 - -0.5 5,529,220 + +0.8 5,529,220 + +0.1 5,529,331 + -0.2 5,529,332 - +0.4 5,529,332 - -0.5
Or see this region's nucleotide sequence