Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22235 and CA265_RS22240 are separated by 1 nucleotides CA265_RS22240 and CA265_RS22245 are separated by 3 nucleotides CA265_RS22245 and CA265_RS22250 are separated by 11 nucleotides
CA265_RS22235: CA265_RS22235 - type IV secretion protein Rhs, at 5,461,867 to 5,463,666
_RS22235
CA265_RS22240: CA265_RS22240 - hypothetical protein, at 5,463,668 to 5,464,471
_RS22240
CA265_RS22245: CA265_RS22245 - hypothetical protein, at 5,464,475 to 5,466,127
_RS22245
CA265_RS22250: CA265_RS22250 - hypothetical protein, at 5,466,139 to 5,466,585
_RS22250
Position (kb) 5464
5465
5466
5467 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5463.508 kb on - strand at 5463.540 kb on - strand at 5463.543 kb on + strand at 5463.543 kb on + strand at 5463.613 kb on - strand at 5463.625 kb on - strand at 5463.625 kb on - strand at 5463.753 kb on + strand, within CA265_RS22240 at 5463.761 kb on + strand, within CA265_RS22240 at 5463.762 kb on - strand, within CA265_RS22240 at 5463.765 kb on + strand, within CA265_RS22240 at 5463.765 kb on + strand, within CA265_RS22240 at 5463.766 kb on - strand, within CA265_RS22240 at 5463.768 kb on + strand, within CA265_RS22240 at 5463.819 kb on + strand, within CA265_RS22240 at 5463.820 kb on - strand, within CA265_RS22240 at 5463.882 kb on - strand, within CA265_RS22240 at 5463.900 kb on - strand, within CA265_RS22240 at 5463.905 kb on + strand, within CA265_RS22240 at 5463.927 kb on + strand, within CA265_RS22240 at 5463.931 kb on + strand, within CA265_RS22240 at 5463.932 kb on - strand, within CA265_RS22240 at 5463.932 kb on - strand, within CA265_RS22240 at 5463.957 kb on + strand, within CA265_RS22240 at 5463.957 kb on + strand at 5463.958 kb on - strand, within CA265_RS22240 at 5463.989 kb on - strand, within CA265_RS22240 at 5464.022 kb on - strand, within CA265_RS22240 at 5464.122 kb on + strand, within CA265_RS22240 at 5464.136 kb on + strand, within CA265_RS22240 at 5464.250 kb on + strand, within CA265_RS22240 at 5464.270 kb on + strand, within CA265_RS22240 at 5464.270 kb on + strand, within CA265_RS22240 at 5464.276 kb on - strand, within CA265_RS22240 at 5464.294 kb on - strand, within CA265_RS22240 at 5464.294 kb on - strand, within CA265_RS22240 at 5464.297 kb on + strand, within CA265_RS22240 at 5464.298 kb on - strand, within CA265_RS22240 at 5464.340 kb on - strand, within CA265_RS22240 at 5464.343 kb on - strand, within CA265_RS22240 at 5464.371 kb on - strand, within CA265_RS22240 at 5464.373 kb on - strand, within CA265_RS22240 at 5464.434 kb on - strand at 5464.446 kb on + strand at 5464.601 kb on - strand at 5464.648 kb on + strand, within CA265_RS22245 at 5464.658 kb on - strand, within CA265_RS22245 at 5464.669 kb on + strand, within CA265_RS22245 at 5464.684 kb on - strand, within CA265_RS22245 at 5464.710 kb on + strand, within CA265_RS22245 at 5464.732 kb on - strand, within CA265_RS22245 at 5464.778 kb on + strand, within CA265_RS22245 at 5464.778 kb on + strand, within CA265_RS22245 at 5464.778 kb on + strand, within CA265_RS22245 at 5464.780 kb on + strand, within CA265_RS22245 at 5464.780 kb on + strand, within CA265_RS22245 at 5464.781 kb on - strand, within CA265_RS22245 at 5464.946 kb on - strand, within CA265_RS22245 at 5464.957 kb on + strand, within CA265_RS22245 at 5465.014 kb on + strand, within CA265_RS22245 at 5465.015 kb on - strand, within CA265_RS22245 at 5465.046 kb on + strand, within CA265_RS22245 at 5465.047 kb on - strand, within CA265_RS22245 at 5465.254 kb on + strand, within CA265_RS22245 at 5465.254 kb on + strand, within CA265_RS22245 at 5465.255 kb on - strand, within CA265_RS22245 at 5465.339 kb on + strand, within CA265_RS22245 at 5465.340 kb on - strand, within CA265_RS22245 at 5465.342 kb on - strand, within CA265_RS22245 at 5465.342 kb on - strand, within CA265_RS22245 at 5465.362 kb on + strand, within CA265_RS22245 at 5465.367 kb on + strand, within CA265_RS22245 at 5465.406 kb on + strand, within CA265_RS22245 at 5465.414 kb on - strand, within CA265_RS22245 at 5465.417 kb on - strand, within CA265_RS22245 at 5465.511 kb on + strand, within CA265_RS22245 at 5465.539 kb on + strand, within CA265_RS22245 at 5465.540 kb on - strand, within CA265_RS22245 at 5465.626 kb on - strand, within CA265_RS22245 at 5465.626 kb on - strand, within CA265_RS22245 at 5465.690 kb on - strand, within CA265_RS22245 at 5465.728 kb on + strand, within CA265_RS22245 at 5465.750 kb on + strand, within CA265_RS22245 at 5465.798 kb on + strand, within CA265_RS22245 at 5465.799 kb on - strand, within CA265_RS22245 at 5465.849 kb on + strand, within CA265_RS22245 at 5465.850 kb on - strand, within CA265_RS22245 at 5465.918 kb on + strand, within CA265_RS22245 at 5465.931 kb on + strand, within CA265_RS22245 at 5465.955 kb on + strand, within CA265_RS22245 at 5466.004 kb on - strand at 5466.014 kb on - strand at 5466.079 kb on - strand at 5466.079 kb on - strand at 5466.111 kb on + strand at 5466.129 kb on + strand at 5466.129 kb on + strand at 5466.617 kb on - strand at 5466.619 kb on + strand at 5466.624 kb on + strand at 5466.625 kb on - strand at 5466.655 kb on + strand at 5466.657 kb on + strand at 5466.658 kb on - strand at 5466.759 kb on + strand at 5466.760 kb on - strand at 5466.769 kb on - strand at 5466.892 kb on - strand at 5466.903 kb on + strand at 5466.904 kb on - strand at 5466.904 kb on - strand at 5466.904 kb on - strand at 5466.905 kb on + strand at 5466.905 kb on + strand at 5466.905 kb on + strand at 5466.906 kb on - strand at 5466.908 kb on + strand at 5466.979 kb on + strand at 5466.980 kb on - strand at 5466.990 kb on - strand at 5467.013 kb on + strand at 5467.079 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,463,508 - +0.1 5,463,540 - +0.4 5,463,543 + +0.5 5,463,543 + +0.5 5,463,613 - +0.2 5,463,625 - +0.5 5,463,625 - +0.2 5,463,753 + CA265_RS22240 0.11 +0.4 5,463,761 + CA265_RS22240 0.12 -1.6 5,463,762 - CA265_RS22240 0.12 +0.6 5,463,765 + CA265_RS22240 0.12 -0.1 5,463,765 + CA265_RS22240 0.12 +0.0 5,463,766 - CA265_RS22240 0.12 +0.7 5,463,768 + CA265_RS22240 0.12 +0.8 5,463,819 + CA265_RS22240 0.19 -0.7 5,463,820 - CA265_RS22240 0.19 +0.3 5,463,882 - CA265_RS22240 0.27 -0.7 5,463,900 - CA265_RS22240 0.29 -0.2 5,463,905 + CA265_RS22240 0.29 +0.5 5,463,927 + CA265_RS22240 0.32 +0.5 5,463,931 + CA265_RS22240 0.33 +0.1 5,463,932 - CA265_RS22240 0.33 +0.1 5,463,932 - CA265_RS22240 0.33 +0.4 5,463,957 + CA265_RS22240 0.36 -0.4 5,463,957 + -0.0 5,463,958 - CA265_RS22240 0.36 -0.1 5,463,989 - CA265_RS22240 0.40 +2.2 5,464,022 - CA265_RS22240 0.44 +0.9 5,464,122 + CA265_RS22240 0.56 -1.3 5,464,136 + CA265_RS22240 0.58 +0.0 5,464,250 + CA265_RS22240 0.72 +0.1 5,464,270 + CA265_RS22240 0.75 -0.8 5,464,270 + CA265_RS22240 0.75 -0.9 5,464,276 - CA265_RS22240 0.76 +0.6 5,464,294 - CA265_RS22240 0.78 -1.4 5,464,294 - CA265_RS22240 0.78 +0.1 5,464,297 + CA265_RS22240 0.78 -1.0 5,464,298 - CA265_RS22240 0.78 +0.6 5,464,340 - CA265_RS22240 0.84 +0.1 5,464,343 - CA265_RS22240 0.84 +1.1 5,464,371 - CA265_RS22240 0.87 +0.1 5,464,373 - CA265_RS22240 0.88 -1.0 5,464,434 - +1.8 5,464,446 + +1.0 5,464,601 - -0.2 5,464,648 + CA265_RS22245 0.10 +2.0 5,464,658 - CA265_RS22245 0.11 -0.2 5,464,669 + CA265_RS22245 0.12 -0.6 5,464,684 - CA265_RS22245 0.13 -1.8 5,464,710 + CA265_RS22245 0.14 -1.5 5,464,732 - CA265_RS22245 0.16 -1.0 5,464,778 + CA265_RS22245 0.18 -0.9 5,464,778 + CA265_RS22245 0.18 -0.2 5,464,778 + CA265_RS22245 0.18 -0.4 5,464,780 + CA265_RS22245 0.18 -0.0 5,464,780 + CA265_RS22245 0.18 -0.5 5,464,781 - CA265_RS22245 0.19 -1.0 5,464,946 - CA265_RS22245 0.28 -0.5 5,464,957 + CA265_RS22245 0.29 -1.2 5,465,014 + CA265_RS22245 0.33 -1.1 5,465,015 - CA265_RS22245 0.33 +0.5 5,465,046 + CA265_RS22245 0.35 -1.0 5,465,047 - CA265_RS22245 0.35 +1.4 5,465,254 + CA265_RS22245 0.47 +0.4 5,465,254 + CA265_RS22245 0.47 +0.2 5,465,255 - CA265_RS22245 0.47 -0.3 5,465,339 + CA265_RS22245 0.52 -0.2 5,465,340 - CA265_RS22245 0.52 -2.0 5,465,342 - CA265_RS22245 0.52 -0.0 5,465,342 - CA265_RS22245 0.52 -0.9 5,465,362 + CA265_RS22245 0.54 -1.6 5,465,367 + CA265_RS22245 0.54 -2.0 5,465,406 + CA265_RS22245 0.56 -0.8 5,465,414 - CA265_RS22245 0.57 +0.4 5,465,417 - CA265_RS22245 0.57 -0.2 5,465,511 + CA265_RS22245 0.63 +2.2 5,465,539 + CA265_RS22245 0.64 -0.2 5,465,540 - CA265_RS22245 0.64 -0.4 5,465,626 - CA265_RS22245 0.70 -1.3 5,465,626 - CA265_RS22245 0.70 -0.3 5,465,690 - CA265_RS22245 0.74 -0.7 5,465,728 + CA265_RS22245 0.76 -0.9 5,465,750 + CA265_RS22245 0.77 -2.1 5,465,798 + CA265_RS22245 0.80 -0.4 5,465,799 - CA265_RS22245 0.80 +0.5 5,465,849 + CA265_RS22245 0.83 +3.0 5,465,850 - CA265_RS22245 0.83 -0.3 5,465,918 + CA265_RS22245 0.87 +1.4 5,465,931 + CA265_RS22245 0.88 +0.9 5,465,955 + CA265_RS22245 0.90 -1.4 5,466,004 - +0.1 5,466,014 - +0.9 5,466,079 - -0.1 5,466,079 - +1.3 5,466,111 + +0.4 5,466,129 + -0.7 5,466,129 + +0.1 5,466,617 - +0.6 5,466,619 + -0.2 5,466,624 + -0.4 5,466,625 - -0.9 5,466,655 + -0.1 5,466,657 + -0.6 5,466,658 - +1.3 5,466,759 + -0.8 5,466,760 - +0.2 5,466,769 - -0.2 5,466,892 - -0.1 5,466,903 + -0.5 5,466,904 - -0.5 5,466,904 - +0.0 5,466,904 - +0.5 5,466,905 + -1.2 5,466,905 + +0.6 5,466,905 + +0.4 5,466,906 - +0.5 5,466,908 + -1.0 5,466,979 + +0.3 5,466,980 - -0.0 5,466,990 - +0.2 5,467,013 + +0.8 5,467,079 - +0.1
Or see this region's nucleotide sequence