Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS21075 and CA265_RS21080 are separated by 0 nucleotides CA265_RS21080 and CA265_RS21085 are separated by 298 nucleotides CA265_RS21085 and CA265_RS21090 are separated by 196 nucleotides
CA265_RS21075: CA265_RS21075 - ATPase, at 5,192,028 to 5,193,164
_RS21075
CA265_RS21080: CA265_RS21080 - hypothetical protein, at 5,193,165 to 5,193,386
_RS21080
CA265_RS21085: CA265_RS21085 - disulfide bond formation protein DsbA, at 5,193,685 to 5,194,401
_RS21085
CA265_RS21090: CA265_RS21090 - peptidase, at 5,194,598 to 5,197,306
_RS21090
Position (kb) 5193
5194
5195 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5192.687 kb on + strand, within CA265_RS21075 at 5192.689 kb on + strand, within CA265_RS21075 at 5192.720 kb on + strand, within CA265_RS21075 at 5192.788 kb on - strand, within CA265_RS21075 at 5192.790 kb on - strand, within CA265_RS21075 at 5192.801 kb on - strand, within CA265_RS21075 at 5192.805 kb on - strand, within CA265_RS21075 at 5192.864 kb on - strand, within CA265_RS21075 at 5192.864 kb on - strand, within CA265_RS21075 at 5192.912 kb on - strand, within CA265_RS21075 at 5192.940 kb on - strand, within CA265_RS21075 at 5193.020 kb on - strand, within CA265_RS21075 at 5193.020 kb on - strand, within CA265_RS21075 at 5193.128 kb on - strand at 5193.131 kb on + strand at 5193.132 kb on - strand at 5193.155 kb on + strand at 5193.156 kb on - strand at 5193.162 kb on + strand at 5193.163 kb on - strand at 5193.222 kb on + strand, within CA265_RS21080 at 5193.259 kb on - strand, within CA265_RS21080 at 5193.311 kb on - strand, within CA265_RS21080 at 5193.346 kb on + strand, within CA265_RS21080 at 5193.352 kb on - strand, within CA265_RS21080 at 5193.359 kb on - strand, within CA265_RS21080 at 5193.415 kb on + strand at 5193.416 kb on - strand at 5193.463 kb on + strand at 5193.508 kb on - strand at 5193.528 kb on + strand at 5193.687 kb on - strand at 5193.837 kb on - strand, within CA265_RS21085 at 5193.857 kb on + strand, within CA265_RS21085 at 5193.857 kb on + strand, within CA265_RS21085 at 5193.862 kb on + strand, within CA265_RS21085 at 5193.893 kb on + strand, within CA265_RS21085 at 5193.894 kb on - strand, within CA265_RS21085 at 5193.898 kb on - strand, within CA265_RS21085 at 5193.903 kb on - strand, within CA265_RS21085 at 5194.068 kb on + strand, within CA265_RS21085 at 5194.069 kb on - strand, within CA265_RS21085 at 5194.069 kb on - strand, within CA265_RS21085 at 5194.105 kb on - strand, within CA265_RS21085 at 5194.123 kb on - strand, within CA265_RS21085 at 5194.164 kb on + strand, within CA265_RS21085 at 5194.258 kb on - strand, within CA265_RS21085 at 5194.394 kb on - strand at 5194.424 kb on - strand at 5194.486 kb on - strand at 5194.489 kb on - strand at 5194.632 kb on - strand at 5194.639 kb on + strand at 5194.712 kb on - strand at 5194.727 kb on + strand at 5194.807 kb on + strand at 5194.825 kb on + strand at 5194.825 kb on + strand at 5194.866 kb on + strand at 5194.867 kb on - strand at 5194.868 kb on + strand at 5194.868 kb on + strand at 5194.869 kb on - strand, within CA265_RS21090 at 5194.947 kb on + strand, within CA265_RS21090 at 5194.947 kb on + strand, within CA265_RS21090 at 5194.947 kb on + strand, within CA265_RS21090 at 5194.986 kb on - strand, within CA265_RS21090 at 5195.021 kb on + strand, within CA265_RS21090 at 5195.048 kb on - strand, within CA265_RS21090 at 5195.048 kb on - strand, within CA265_RS21090 at 5195.108 kb on - strand, within CA265_RS21090 at 5195.116 kb on + strand, within CA265_RS21090 at 5195.210 kb on + strand, within CA265_RS21090 at 5195.241 kb on + strand, within CA265_RS21090 at 5195.242 kb on - strand, within CA265_RS21090 at 5195.242 kb on - strand, within CA265_RS21090 at 5195.298 kb on + strand, within CA265_RS21090 at 5195.299 kb on - strand, within CA265_RS21090 at 5195.305 kb on - strand, within CA265_RS21090 at 5195.352 kb on + strand, within CA265_RS21090 at 5195.352 kb on + strand, within CA265_RS21090
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,192,687 + CA265_RS21075 0.58 -0.3 5,192,689 + CA265_RS21075 0.58 -0.2 5,192,720 + CA265_RS21075 0.61 +0.1 5,192,788 - CA265_RS21075 0.67 +0.3 5,192,790 - CA265_RS21075 0.67 +0.6 5,192,801 - CA265_RS21075 0.68 +0.1 5,192,805 - CA265_RS21075 0.68 +0.5 5,192,864 - CA265_RS21075 0.74 +0.8 5,192,864 - CA265_RS21075 0.74 -0.7 5,192,912 - CA265_RS21075 0.78 -0.0 5,192,940 - CA265_RS21075 0.80 +2.4 5,193,020 - CA265_RS21075 0.87 +0.0 5,193,020 - CA265_RS21075 0.87 +0.4 5,193,128 - +0.3 5,193,131 + +0.0 5,193,132 - +0.2 5,193,155 + +0.7 5,193,156 - -0.3 5,193,162 + +0.6 5,193,163 - -0.3 5,193,222 + CA265_RS21080 0.26 -2.2 5,193,259 - CA265_RS21080 0.42 -0.3 5,193,311 - CA265_RS21080 0.66 +0.7 5,193,346 + CA265_RS21080 0.82 +0.6 5,193,352 - CA265_RS21080 0.84 +0.2 5,193,359 - CA265_RS21080 0.87 +0.0 5,193,415 + -0.2 5,193,416 - +0.5 5,193,463 + +0.0 5,193,508 - +0.3 5,193,528 + -0.1 5,193,687 - +0.3 5,193,837 - CA265_RS21085 0.21 +1.3 5,193,857 + CA265_RS21085 0.24 -0.7 5,193,857 + CA265_RS21085 0.24 +0.5 5,193,862 + CA265_RS21085 0.25 -0.9 5,193,893 + CA265_RS21085 0.29 +0.3 5,193,894 - CA265_RS21085 0.29 -0.6 5,193,898 - CA265_RS21085 0.30 -2.0 5,193,903 - CA265_RS21085 0.30 -1.4 5,194,068 + CA265_RS21085 0.53 -0.6 5,194,069 - CA265_RS21085 0.54 -0.5 5,194,069 - CA265_RS21085 0.54 -0.2 5,194,105 - CA265_RS21085 0.59 -0.7 5,194,123 - CA265_RS21085 0.61 +0.1 5,194,164 + CA265_RS21085 0.67 -0.6 5,194,258 - CA265_RS21085 0.80 -0.5 5,194,394 - +0.4 5,194,424 - +0.8 5,194,486 - -1.0 5,194,489 - -1.0 5,194,632 - +1.0 5,194,639 + -1.8 5,194,712 - +0.1 5,194,727 + +0.6 5,194,807 + +0.2 5,194,825 + -0.1 5,194,825 + -1.1 5,194,866 + +0.3 5,194,867 - -0.7 5,194,868 + +0.3 5,194,868 + +0.4 5,194,869 - CA265_RS21090 0.10 -1.2 5,194,947 + CA265_RS21090 0.13 -0.1 5,194,947 + CA265_RS21090 0.13 -0.3 5,194,947 + CA265_RS21090 0.13 -1.2 5,194,986 - CA265_RS21090 0.14 -0.4 5,195,021 + CA265_RS21090 0.16 +0.3 5,195,048 - CA265_RS21090 0.17 +0.7 5,195,048 - CA265_RS21090 0.17 -0.4 5,195,108 - CA265_RS21090 0.19 +0.3 5,195,116 + CA265_RS21090 0.19 +1.2 5,195,210 + CA265_RS21090 0.23 -0.1 5,195,241 + CA265_RS21090 0.24 -0.8 5,195,242 - CA265_RS21090 0.24 +0.1 5,195,242 - CA265_RS21090 0.24 -0.7 5,195,298 + CA265_RS21090 0.26 -0.2 5,195,299 - CA265_RS21090 0.26 -0.1 5,195,305 - CA265_RS21090 0.26 +0.7 5,195,352 + CA265_RS21090 0.28 +0.1 5,195,352 + CA265_RS21090 0.28 -1.2
Or see this region's nucleotide sequence