Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS20755 and CA265_RS20760 are separated by 9 nucleotides CA265_RS20760 and CA265_RS20765 are separated by 3 nucleotides
CA265_RS20755: CA265_RS20755 - hypothetical protein, at 5,127,069 to 5,128,277
_RS20755
CA265_RS20760: CA265_RS20760 - hypothetical protein, at 5,128,287 to 5,129,108
_RS20760
CA265_RS20765: CA265_RS20765 - mobilization protein, at 5,129,112 to 5,131,145
_RS20765
Position (kb) 5128
5129
5130 Strain fitness (log2 ratio) -1
0
1 at 5127.358 kb on - strand, within CA265_RS20755 at 5127.377 kb on + strand, within CA265_RS20755 at 5127.378 kb on - strand, within CA265_RS20755 at 5127.599 kb on - strand, within CA265_RS20755 at 5127.623 kb on - strand, within CA265_RS20755 at 5127.701 kb on - strand, within CA265_RS20755 at 5127.701 kb on - strand, within CA265_RS20755 at 5127.896 kb on + strand, within CA265_RS20755 at 5127.897 kb on - strand, within CA265_RS20755 at 5127.897 kb on - strand, within CA265_RS20755 at 5127.904 kb on + strand, within CA265_RS20755 at 5127.905 kb on - strand at 5127.905 kb on - strand, within CA265_RS20755 at 5127.907 kb on - strand, within CA265_RS20755 at 5128.002 kb on + strand, within CA265_RS20755 at 5128.059 kb on - strand, within CA265_RS20755 at 5128.213 kb on - strand at 5128.217 kb on + strand at 5128.217 kb on + strand at 5128.324 kb on - strand at 5128.324 kb on - strand at 5128.326 kb on + strand at 5128.422 kb on + strand, within CA265_RS20760 at 5128.430 kb on + strand, within CA265_RS20760 at 5128.617 kb on - strand, within CA265_RS20760 at 5128.617 kb on - strand, within CA265_RS20760 at 5128.617 kb on - strand, within CA265_RS20760 at 5128.624 kb on + strand, within CA265_RS20760 at 5128.647 kb on - strand, within CA265_RS20760 at 5128.903 kb on + strand, within CA265_RS20760 at 5128.903 kb on + strand, within CA265_RS20760 at 5128.938 kb on + strand, within CA265_RS20760 at 5128.974 kb on - strand, within CA265_RS20760 at 5128.974 kb on - strand, within CA265_RS20760 at 5128.978 kb on - strand, within CA265_RS20760 at 5128.999 kb on - strand, within CA265_RS20760 at 5129.062 kb on + strand at 5129.077 kb on - strand at 5129.090 kb on - strand at 5129.090 kb on - strand at 5129.111 kb on + strand at 5129.200 kb on + strand at 5129.200 kb on + strand at 5129.201 kb on - strand at 5129.203 kb on - strand at 5129.259 kb on - strand at 5129.287 kb on - strand at 5129.326 kb on + strand, within CA265_RS20765 at 5129.492 kb on + strand, within CA265_RS20765 at 5129.495 kb on + strand, within CA265_RS20765 at 5129.495 kb on + strand, within CA265_RS20765 at 5129.495 kb on + strand, within CA265_RS20765 at 5129.495 kb on + strand, within CA265_RS20765 at 5129.495 kb on + strand, within CA265_RS20765 at 5129.496 kb on - strand, within CA265_RS20765 at 5129.496 kb on - strand, within CA265_RS20765 at 5129.496 kb on - strand, within CA265_RS20765 at 5129.527 kb on + strand, within CA265_RS20765 at 5129.553 kb on - strand, within CA265_RS20765 at 5129.711 kb on - strand, within CA265_RS20765 at 5129.865 kb on + strand, within CA265_RS20765 at 5129.865 kb on + strand, within CA265_RS20765 at 5129.865 kb on + strand, within CA265_RS20765 at 5129.867 kb on - strand, within CA265_RS20765 at 5129.956 kb on + strand, within CA265_RS20765 at 5129.977 kb on - strand, within CA265_RS20765 at 5129.978 kb on + strand, within CA265_RS20765
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 5,127,358 - CA265_RS20755 0.24 -0.1 5,127,377 + CA265_RS20755 0.25 +0.1 5,127,378 - CA265_RS20755 0.26 -0.6 5,127,599 - CA265_RS20755 0.44 -0.6 5,127,623 - CA265_RS20755 0.46 -1.3 5,127,701 - CA265_RS20755 0.52 -0.3 5,127,701 - CA265_RS20755 0.52 +1.0 5,127,896 + CA265_RS20755 0.68 -0.9 5,127,897 - CA265_RS20755 0.68 -0.2 5,127,897 - CA265_RS20755 0.68 -1.3 5,127,904 + CA265_RS20755 0.69 -0.1 5,127,905 - +0.2 5,127,905 - CA265_RS20755 0.69 +0.4 5,127,907 - CA265_RS20755 0.69 -0.4 5,128,002 + CA265_RS20755 0.77 +0.2 5,128,059 - CA265_RS20755 0.82 -0.2 5,128,213 - -0.1 5,128,217 + -0.7 5,128,217 + +0.4 5,128,324 - -1.1 5,128,324 - -0.3 5,128,326 + -1.0 5,128,422 + CA265_RS20760 0.16 +0.3 5,128,430 + CA265_RS20760 0.17 -0.8 5,128,617 - CA265_RS20760 0.40 -1.0 5,128,617 - CA265_RS20760 0.40 +1.3 5,128,617 - CA265_RS20760 0.40 +0.3 5,128,624 + CA265_RS20760 0.41 +0.0 5,128,647 - CA265_RS20760 0.44 -1.7 5,128,903 + CA265_RS20760 0.75 -0.6 5,128,903 + CA265_RS20760 0.75 -1.1 5,128,938 + CA265_RS20760 0.79 -1.0 5,128,974 - CA265_RS20760 0.84 -0.5 5,128,974 - CA265_RS20760 0.84 -1.0 5,128,978 - CA265_RS20760 0.84 -0.8 5,128,999 - CA265_RS20760 0.87 -0.1 5,129,062 + -0.7 5,129,077 - -0.6 5,129,090 - +0.6 5,129,090 - +0.1 5,129,111 + +0.3 5,129,200 + -0.2 5,129,200 + -1.2 5,129,201 - -0.1 5,129,203 - -0.7 5,129,259 - -0.5 5,129,287 - -0.1 5,129,326 + CA265_RS20765 0.11 -1.2 5,129,492 + CA265_RS20765 0.19 -0.8 5,129,495 + CA265_RS20765 0.19 -0.9 5,129,495 + CA265_RS20765 0.19 -0.9 5,129,495 + CA265_RS20765 0.19 +0.4 5,129,495 + CA265_RS20765 0.19 +0.8 5,129,495 + CA265_RS20765 0.19 +1.0 5,129,496 - CA265_RS20765 0.19 -0.8 5,129,496 - CA265_RS20765 0.19 -0.2 5,129,496 - CA265_RS20765 0.19 -0.3 5,129,527 + CA265_RS20765 0.20 -1.2 5,129,553 - CA265_RS20765 0.22 -0.3 5,129,711 - CA265_RS20765 0.29 +0.3 5,129,865 + CA265_RS20765 0.37 -0.4 5,129,865 + CA265_RS20765 0.37 +0.2 5,129,865 + CA265_RS20765 0.37 -0.5 5,129,867 - CA265_RS20765 0.37 -0.0 5,129,956 + CA265_RS20765 0.41 +0.3 5,129,977 - CA265_RS20765 0.43 -0.0 5,129,978 + CA265_RS20765 0.43 -0.2
Or see this region's nucleotide sequence