Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS16550 and CA265_RS16555 overlap by 11 nucleotides CA265_RS16555 and CA265_RS16560 are separated by 292 nucleotides CA265_RS16560 and CA265_RS16565 are separated by 91 nucleotides CA265_RS16565 and CA265_RS16570 are separated by 80 nucleotides
CA265_RS16545: CA265_RS16545 - beta-ketoacyl-ACP synthase, at 4,160,873 to 4,162,150
_RS16545
CA265_RS16550: CA265_RS16550 - acyl carrier protein, at 4,162,143 to 4,162,403
_RS16550
CA265_RS16555: CA265_RS16555 - hypothetical protein, at 4,162,393 to 4,162,857
_RS16555
CA265_RS16560: CA265_RS16560 - hypothetical protein, at 4,163,150 to 4,163,332
_RS16560
CA265_RS16565: CA265_RS16565 - hypothetical protein, at 4,163,424 to 4,163,732
_RS16565
CA265_RS16570: CA265_RS16570 - peptidase C39, at 4,163,813 to 4,165,996
_RS16570
Position (kb) 4163
4164 Strain fitness (log2 ratio) -1
0
1 at 4162.220 kb on + strand, within CA265_RS16550 at 4162.221 kb on - strand, within CA265_RS16550 at 4162.292 kb on + strand, within CA265_RS16550 at 4162.440 kb on + strand, within CA265_RS16555 at 4162.467 kb on + strand, within CA265_RS16555 at 4162.468 kb on - strand, within CA265_RS16555 at 4162.494 kb on - strand, within CA265_RS16555 at 4162.545 kb on + strand, within CA265_RS16555 at 4162.646 kb on + strand, within CA265_RS16555 at 4162.646 kb on + strand, within CA265_RS16555 at 4162.659 kb on - strand, within CA265_RS16555 at 4162.675 kb on - strand, within CA265_RS16555 at 4162.675 kb on - strand, within CA265_RS16555 at 4162.675 kb on - strand, within CA265_RS16555 at 4162.679 kb on - strand, within CA265_RS16555 at 4162.679 kb on - strand, within CA265_RS16555 at 4162.698 kb on - strand, within CA265_RS16555 at 4162.709 kb on - strand, within CA265_RS16555 at 4162.709 kb on - strand, within CA265_RS16555 at 4162.717 kb on - strand, within CA265_RS16555 at 4162.717 kb on - strand, within CA265_RS16555 at 4162.735 kb on + strand, within CA265_RS16555 at 4162.735 kb on + strand, within CA265_RS16555 at 4162.736 kb on - strand, within CA265_RS16555 at 4162.736 kb on - strand, within CA265_RS16555 at 4162.746 kb on - strand, within CA265_RS16555 at 4162.746 kb on - strand, within CA265_RS16555 at 4162.761 kb on - strand, within CA265_RS16555 at 4162.838 kb on - strand at 4162.842 kb on - strand at 4162.850 kb on + strand at 4162.850 kb on + strand at 4162.850 kb on + strand at 4162.851 kb on - strand at 4162.851 kb on - strand at 4162.869 kb on + strand at 4162.873 kb on + strand at 4162.874 kb on - strand at 4162.874 kb on - strand at 4162.903 kb on - strand at 4162.908 kb on - strand at 4162.911 kb on - strand at 4162.913 kb on - strand at 4163.060 kb on - strand at 4163.064 kb on + strand at 4163.128 kb on - strand at 4163.170 kb on - strand, within CA265_RS16560 at 4163.171 kb on + strand, within CA265_RS16560 at 4163.223 kb on + strand, within CA265_RS16560 at 4163.224 kb on - strand, within CA265_RS16560 at 4163.285 kb on - strand, within CA265_RS16560 at 4163.347 kb on + strand at 4163.355 kb on + strand at 4163.356 kb on - strand at 4163.356 kb on - strand at 4163.359 kb on + strand at 4163.359 kb on + strand at 4163.388 kb on + strand at 4163.405 kb on + strand at 4163.472 kb on + strand, within CA265_RS16565 at 4163.519 kb on + strand, within CA265_RS16565 at 4163.542 kb on + strand, within CA265_RS16565 at 4163.542 kb on + strand, within CA265_RS16565 at 4163.545 kb on + strand, within CA265_RS16565 at 4163.545 kb on + strand, within CA265_RS16565 at 4163.546 kb on - strand, within CA265_RS16565 at 4163.549 kb on - strand, within CA265_RS16565 at 4163.574 kb on + strand, within CA265_RS16565 at 4163.607 kb on + strand, within CA265_RS16565 at 4163.670 kb on - strand, within CA265_RS16565 at 4163.752 kb on + strand at 4163.752 kb on + strand at 4163.752 kb on + strand at 4163.798 kb on - strand at 4163.798 kb on - strand at 4163.978 kb on - strand at 4163.982 kb on - strand at 4164.032 kb on + strand, within CA265_RS16570 at 4164.044 kb on + strand, within CA265_RS16570 at 4164.045 kb on - strand, within CA265_RS16570 at 4164.045 kb on - strand, within CA265_RS16570 at 4164.049 kb on - strand at 4164.049 kb on - strand, within CA265_RS16570 at 4164.049 kb on - strand, within CA265_RS16570 at 4164.110 kb on - strand, within CA265_RS16570 at 4164.110 kb on - strand, within CA265_RS16570 at 4164.115 kb on - strand, within CA265_RS16570 at 4164.128 kb on + strand, within CA265_RS16570 at 4164.183 kb on + strand, within CA265_RS16570 at 4164.238 kb on + strand, within CA265_RS16570 at 4164.250 kb on + strand, within CA265_RS16570 at 4164.289 kb on + strand, within CA265_RS16570
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 4,162,220 + CA265_RS16550 0.30 -0.2 4,162,221 - CA265_RS16550 0.30 -0.6 4,162,292 + CA265_RS16550 0.57 -0.9 4,162,440 + CA265_RS16555 0.10 -1.0 4,162,467 + CA265_RS16555 0.16 +1.1 4,162,468 - CA265_RS16555 0.16 +0.3 4,162,494 - CA265_RS16555 0.22 -0.7 4,162,545 + CA265_RS16555 0.33 -1.0 4,162,646 + CA265_RS16555 0.54 -1.6 4,162,646 + CA265_RS16555 0.54 +0.6 4,162,659 - CA265_RS16555 0.57 -0.8 4,162,675 - CA265_RS16555 0.61 -1.3 4,162,675 - CA265_RS16555 0.61 -0.0 4,162,675 - CA265_RS16555 0.61 -0.6 4,162,679 - CA265_RS16555 0.62 -1.4 4,162,679 - CA265_RS16555 0.62 -0.3 4,162,698 - CA265_RS16555 0.66 +0.3 4,162,709 - CA265_RS16555 0.68 +0.6 4,162,709 - CA265_RS16555 0.68 -1.6 4,162,717 - CA265_RS16555 0.70 -0.2 4,162,717 - CA265_RS16555 0.70 +0.1 4,162,735 + CA265_RS16555 0.74 +0.4 4,162,735 + CA265_RS16555 0.74 -0.7 4,162,736 - CA265_RS16555 0.74 -0.3 4,162,736 - CA265_RS16555 0.74 -0.2 4,162,746 - CA265_RS16555 0.76 +0.1 4,162,746 - CA265_RS16555 0.76 -1.1 4,162,761 - CA265_RS16555 0.79 -1.0 4,162,838 - -0.2 4,162,842 - -0.1 4,162,850 + -0.1 4,162,850 + -0.3 4,162,850 + -0.7 4,162,851 - -0.2 4,162,851 - -0.1 4,162,869 + -1.5 4,162,873 + -0.1 4,162,874 - -0.5 4,162,874 - -0.2 4,162,903 - -0.3 4,162,908 - +0.2 4,162,911 - -0.3 4,162,913 - +0.2 4,163,060 - -0.4 4,163,064 + +0.8 4,163,128 - -0.5 4,163,170 - CA265_RS16560 0.11 -1.0 4,163,171 + CA265_RS16560 0.11 -0.1 4,163,223 + CA265_RS16560 0.40 -0.1 4,163,224 - CA265_RS16560 0.40 -0.5 4,163,285 - CA265_RS16560 0.74 -0.8 4,163,347 + -0.8 4,163,355 + -0.2 4,163,356 - -0.8 4,163,356 - +0.3 4,163,359 + -0.2 4,163,359 + +0.3 4,163,388 + -0.1 4,163,405 + +0.4 4,163,472 + CA265_RS16565 0.16 +0.2 4,163,519 + CA265_RS16565 0.31 +0.2 4,163,542 + CA265_RS16565 0.38 +0.8 4,163,542 + CA265_RS16565 0.38 +0.5 4,163,545 + CA265_RS16565 0.39 +0.5 4,163,545 + CA265_RS16565 0.39 -0.1 4,163,546 - CA265_RS16565 0.39 -0.6 4,163,549 - CA265_RS16565 0.40 -0.8 4,163,574 + CA265_RS16565 0.49 +0.2 4,163,607 + CA265_RS16565 0.59 +0.3 4,163,670 - CA265_RS16565 0.80 -0.1 4,163,752 + +0.1 4,163,752 + -0.1 4,163,752 + -0.3 4,163,798 - -0.4 4,163,798 - -0.4 4,163,978 - -0.1 4,163,982 - -0.2 4,164,032 + CA265_RS16570 0.10 -0.2 4,164,044 + CA265_RS16570 0.11 +0.4 4,164,045 - CA265_RS16570 0.11 -0.7 4,164,045 - CA265_RS16570 0.11 +0.3 4,164,049 - -0.4 4,164,049 - CA265_RS16570 0.11 -1.4 4,164,049 - CA265_RS16570 0.11 -0.3 4,164,110 - CA265_RS16570 0.14 -1.7 4,164,110 - CA265_RS16570 0.14 -1.1 4,164,115 - CA265_RS16570 0.14 +0.8 4,164,128 + CA265_RS16570 0.14 -0.3 4,164,183 + CA265_RS16570 0.17 +0.2 4,164,238 + CA265_RS16570 0.19 -0.0 4,164,250 + CA265_RS16570 0.20 +0.9 4,164,289 + CA265_RS16570 0.22 +0.4
Or see this region's nucleotide sequence