Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS16300 and CA265_RS16305 are separated by 94 nucleotides CA265_RS16305 and CA265_RS16310 are separated by 11 nucleotides CA265_RS16310 and CA265_RS16315 are separated by 222 nucleotides
CA265_RS16300: CA265_RS16300 - lipid-A-disaccharide synthase, at 4,098,977 to 4,100,080
_RS16300
CA265_RS16305: CA265_RS16305 - stationary phase survival protein SurE, at 4,100,175 to 4,100,447
_RS16305
CA265_RS16310: CA265_RS16310 - 5'/3'-nucleotidase SurE, at 4,100,459 to 4,101,298
_RS16310
CA265_RS16315: CA265_RS16315 - peptidase M16, at 4,101,521 to 4,104,454
_RS16315
Position (kb) 4100
4101
4102 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4100.095 kb on - strand at 4100.095 kb on - strand at 4100.155 kb on - strand at 4100.155 kb on - strand at 4100.232 kb on - strand, within CA265_RS16305 at 4100.292 kb on - strand, within CA265_RS16305 at 4100.352 kb on - strand, within CA265_RS16305 at 4100.352 kb on - strand, within CA265_RS16305 at 4100.354 kb on - strand, within CA265_RS16305 at 4100.364 kb on - strand, within CA265_RS16305 at 4100.425 kb on - strand at 4100.471 kb on - strand at 4100.843 kb on - strand, within CA265_RS16310 at 4100.843 kb on - strand, within CA265_RS16310 at 4100.864 kb on - strand, within CA265_RS16310 at 4100.951 kb on - strand, within CA265_RS16310 at 4100.951 kb on - strand, within CA265_RS16310 at 4100.964 kb on - strand, within CA265_RS16310 at 4101.093 kb on - strand, within CA265_RS16310 at 4101.239 kb on - strand at 4101.336 kb on - strand at 4101.422 kb on + strand at 4101.422 kb on + strand at 4101.423 kb on - strand at 4101.423 kb on - strand at 4101.424 kb on + strand at 4101.425 kb on - strand at 4101.442 kb on - strand at 4101.487 kb on + strand at 4101.534 kb on + strand at 4101.556 kb on - strand at 4101.559 kb on + strand at 4101.590 kb on + strand at 4101.590 kb on + strand at 4101.591 kb on - strand at 4101.632 kb on + strand at 4101.632 kb on + strand at 4101.633 kb on - strand at 4101.633 kb on - strand at 4101.637 kb on - strand at 4101.637 kb on - strand at 4101.666 kb on - strand at 4101.718 kb on + strand at 4101.721 kb on + strand at 4101.721 kb on + strand at 4101.721 kb on + strand at 4101.722 kb on - strand at 4101.728 kb on + strand at 4101.843 kb on - strand, within CA265_RS16315 at 4101.843 kb on - strand, within CA265_RS16315 at 4101.923 kb on - strand, within CA265_RS16315 at 4101.933 kb on - strand, within CA265_RS16315 at 4101.972 kb on - strand, within CA265_RS16315 at 4101.972 kb on - strand, within CA265_RS16315 at 4101.994 kb on + strand, within CA265_RS16315 at 4102.058 kb on + strand, within CA265_RS16315 at 4102.105 kb on - strand, within CA265_RS16315 at 4102.167 kb on - strand, within CA265_RS16315 at 4102.226 kb on + strand, within CA265_RS16315 at 4102.226 kb on + strand, within CA265_RS16315 at 4102.246 kb on + strand, within CA265_RS16315
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 4,100,095 - +0.2 4,100,095 - -0.2 4,100,155 - -0.2 4,100,155 - -0.6 4,100,232 - CA265_RS16305 0.21 -0.4 4,100,292 - CA265_RS16305 0.43 +0.3 4,100,352 - CA265_RS16305 0.65 -0.7 4,100,352 - CA265_RS16305 0.65 -1.0 4,100,354 - CA265_RS16305 0.66 +0.8 4,100,364 - CA265_RS16305 0.69 +0.5 4,100,425 - -0.4 4,100,471 - -0.4 4,100,843 - CA265_RS16310 0.46 +0.2 4,100,843 - CA265_RS16310 0.46 +0.1 4,100,864 - CA265_RS16310 0.48 -1.6 4,100,951 - CA265_RS16310 0.59 -0.2 4,100,951 - CA265_RS16310 0.59 -1.2 4,100,964 - CA265_RS16310 0.60 +0.1 4,101,093 - CA265_RS16310 0.75 -1.0 4,101,239 - -0.8 4,101,336 - -0.1 4,101,422 + +1.0 4,101,422 + -0.2 4,101,423 - +0.0 4,101,423 - +0.4 4,101,424 + +0.8 4,101,425 - -0.9 4,101,442 - -0.0 4,101,487 + +0.7 4,101,534 + -0.7 4,101,556 - -0.3 4,101,559 + +0.5 4,101,590 + -0.2 4,101,590 + -0.0 4,101,591 - +0.1 4,101,632 + +0.5 4,101,632 + -0.9 4,101,633 - -0.1 4,101,633 - -1.1 4,101,637 - +0.0 4,101,637 - -1.1 4,101,666 - +0.9 4,101,718 + +0.1 4,101,721 + -0.2 4,101,721 + -0.1 4,101,721 + -2.7 4,101,722 - -2.3 4,101,728 + -0.4 4,101,843 - CA265_RS16315 0.11 +0.9 4,101,843 - CA265_RS16315 0.11 +2.6 4,101,923 - CA265_RS16315 0.14 -1.4 4,101,933 - CA265_RS16315 0.14 -2.4 4,101,972 - CA265_RS16315 0.15 -0.1 4,101,972 - CA265_RS16315 0.15 +0.1 4,101,994 + CA265_RS16315 0.16 -0.2 4,102,058 + CA265_RS16315 0.18 -1.1 4,102,105 - CA265_RS16315 0.20 -0.6 4,102,167 - CA265_RS16315 0.22 -0.6 4,102,226 + CA265_RS16315 0.24 +0.3 4,102,226 + CA265_RS16315 0.24 +0.1 4,102,246 + CA265_RS16315 0.25 +0.2
Or see this region's nucleotide sequence