Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS02035 and CA265_RS02040 are separated by 185 nucleotides CA265_RS02040 and CA265_RS02045 are separated by 122 nucleotides CA265_RS02045 and CA265_RS02050 are separated by 220 nucleotides
CA265_RS02035: CA265_RS02035 - hypothetical protein, at 515,966 to 516,949
_RS02035
CA265_RS02040: CA265_RS02040 - N-acetyltransferase, at 517,135 to 517,617
_RS02040
CA265_RS02045: CA265_RS02045 - hypothetical protein, at 517,740 to 518,030
_RS02045
CA265_RS02050: CA265_RS02050 - 4-hydroxy-tetrahydrodipicolinate synthase, at 518,251 to 519,138
_RS02050
Position (kb) 517
518
519 Strain fitness (log2 ratio) -1
0
1 at 516.757 kb on + strand, within CA265_RS02035 at 516.812 kb on - strand, within CA265_RS02035 at 516.843 kb on - strand, within CA265_RS02035 at 516.875 kb on + strand at 516.876 kb on - strand at 517.013 kb on + strand at 517.015 kb on + strand at 517.016 kb on - strand at 517.016 kb on - strand at 517.069 kb on - strand at 517.069 kb on - strand at 517.094 kb on + strand at 517.096 kb on + strand at 517.179 kb on + strand at 517.184 kb on - strand, within CA265_RS02040 at 517.264 kb on - strand, within CA265_RS02040 at 517.340 kb on - strand, within CA265_RS02040 at 517.365 kb on - strand, within CA265_RS02040 at 517.373 kb on - strand, within CA265_RS02040 at 517.404 kb on - strand, within CA265_RS02040 at 517.532 kb on + strand, within CA265_RS02040 at 517.533 kb on - strand, within CA265_RS02040 at 517.568 kb on + strand, within CA265_RS02040 at 517.616 kb on - strand at 517.638 kb on + strand at 517.642 kb on - strand at 517.643 kb on + strand at 517.643 kb on + strand at 517.757 kb on - strand at 517.821 kb on - strand, within CA265_RS02045 at 517.868 kb on + strand, within CA265_RS02045 at 518.016 kb on + strand at 518.017 kb on - strand at 518.064 kb on - strand at 518.079 kb on + strand at 518.082 kb on + strand at 518.082 kb on + strand at 518.083 kb on - strand at 518.083 kb on - strand at 518.088 kb on + strand at 518.147 kb on - strand at 518.234 kb on + strand at 518.253 kb on - strand at 518.257 kb on + strand at 518.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 516,757 + CA265_RS02035 0.80 -0.3 516,812 - CA265_RS02035 0.86 +1.3 516,843 - CA265_RS02035 0.89 +0.5 516,875 + +1.0 516,876 - -0.4 517,013 + -1.1 517,015 + +0.2 517,016 - +0.3 517,016 - +0.2 517,069 - -0.5 517,069 - +0.2 517,094 + -0.3 517,096 + -1.3 517,179 + -0.4 517,184 - CA265_RS02040 0.10 +0.1 517,264 - CA265_RS02040 0.27 -0.2 517,340 - CA265_RS02040 0.42 -0.2 517,365 - CA265_RS02040 0.48 +0.4 517,373 - CA265_RS02040 0.49 +1.1 517,404 - CA265_RS02040 0.56 -0.2 517,532 + CA265_RS02040 0.82 -1.1 517,533 - CA265_RS02040 0.82 -0.1 517,568 + CA265_RS02040 0.90 -0.8 517,616 - +0.2 517,638 + -0.3 517,642 - -0.8 517,643 + +0.0 517,643 + +0.9 517,757 - +0.6 517,821 - CA265_RS02045 0.28 -0.5 517,868 + CA265_RS02045 0.44 -1.1 518,016 + +0.3 518,017 - +0.3 518,064 - -0.2 518,079 + +0.4 518,082 + +0.1 518,082 + +0.0 518,083 - -0.8 518,083 - +0.1 518,088 + +0.1 518,147 - -0.4 518,234 + +0.0 518,253 - +0.2 518,257 + +0.2 518,257 + -0.5
Or see this region's nucleotide sequence