Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4785

Experiment: sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4784 and Ac3H11_4785 are separated by 159 nucleotidesAc3H11_4785 and Ac3H11_4786 are separated by 71 nucleotidesAc3H11_4786 and Ac3H11_4787 are separated by 1 nucleotides Ac3H11_4784 - Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46), at 84,039 to 84,782 _4784 Ac3H11_4785 - Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC (TC 3.A.1.1.3), at 84,942 to 85,946 _4785 Ac3H11_4786 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 86,018 to 86,869 _4786 Ac3H11_4787 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 86,871 to 87,752 _4787 Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1 2at 84.139 kb on + strand, within Ac3H11_4784at 84.139 kb on + strand, within Ac3H11_4784at 84.139 kb on + strand, within Ac3H11_4784at 84.140 kb on - strand, within Ac3H11_4784at 84.140 kb on - strand, within Ac3H11_4784at 84.140 kb on - strand, within Ac3H11_4784at 84.140 kb on - strand, within Ac3H11_4784at 84.140 kb on - strand, within Ac3H11_4784at 84.140 kb on - strand, within Ac3H11_4784at 84.682 kb on + strand, within Ac3H11_4784at 84.682 kb on + strand, within Ac3H11_4784at 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.798 kb on + strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 84.799 kb on - strandat 85.081 kb on + strand, within Ac3H11_4785at 85.081 kb on + strand, within Ac3H11_4785at 85.081 kb on + strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.082 kb on - strand, within Ac3H11_4785at 85.270 kb on + strand, within Ac3H11_4785at 85.270 kb on + strand, within Ac3H11_4785at 85.270 kb on + strand, within Ac3H11_4785at 85.270 kb on + strand, within Ac3H11_4785at 85.270 kb on + strand, within Ac3H11_4785at 85.270 kb on + strand, within Ac3H11_4785at 85.270 kb on + strand, within Ac3H11_4785at 85.271 kb on - strand, within Ac3H11_4785at 85.271 kb on - strand, within Ac3H11_4785at 85.271 kb on - strand, within Ac3H11_4785at 85.642 kb on + strand, within Ac3H11_4785at 85.642 kb on + strand, within Ac3H11_4785at 85.642 kb on + strand, within Ac3H11_4785at 85.643 kb on - strand, within Ac3H11_4785at 85.643 kb on - strand, within Ac3H11_4785at 85.643 kb on - strand, within Ac3H11_4785at 85.676 kb on - strand, within Ac3H11_4785at 85.684 kb on + strand, within Ac3H11_4785at 85.684 kb on + strand, within Ac3H11_4785at 85.685 kb on - strand, within Ac3H11_4785at 85.685 kb on - strand, within Ac3H11_4785at 85.685 kb on - strand, within Ac3H11_4785at 85.964 kb on - strandat 85.983 kb on + strandat 86.010 kb on + strandat 86.181 kb on + strand, within Ac3H11_4786at 86.181 kb on + strand, within Ac3H11_4786at 86.181 kb on + strand, within Ac3H11_4786at 86.181 kb on + strand, within Ac3H11_4786at 86.181 kb on + strand, within Ac3H11_4786at 86.181 kb on + strand, within Ac3H11_4786at 86.181 kb on + strand, within Ac3H11_4786at 86.181 kb on + strand, within Ac3H11_4786at 86.181 kb on + strand, within Ac3H11_4786at 86.181 kb on + strand, within Ac3H11_4786at 86.181 kb on + strand, within Ac3H11_4786at 86.181 kb on + strand, within Ac3H11_4786at 86.181 kb on + strand, within Ac3H11_4786at 86.182 kb on - strand, within Ac3H11_4786at 86.182 kb on - strand, within Ac3H11_4786at 86.182 kb on - strand, within Ac3H11_4786at 86.182 kb on - strand, within Ac3H11_4786at 86.182 kb on - strand, within Ac3H11_4786at 86.220 kb on + strand, within Ac3H11_4786at 86.220 kb on + strand, within Ac3H11_4786at 86.220 kb on + strand, within Ac3H11_4786at 86.220 kb on + strand, within Ac3H11_4786at 86.221 kb on - strand, within Ac3H11_4786at 86.221 kb on - strand, within Ac3H11_4786at 86.221 kb on - strand, within Ac3H11_4786at 86.221 kb on - strand, within Ac3H11_4786at 86.221 kb on - strand, within Ac3H11_4786at 86.221 kb on - strand, within Ac3H11_4786at 86.221 kb on - strand, within Ac3H11_4786at 86.235 kb on + strand, within Ac3H11_4786at 86.235 kb on + strand, within Ac3H11_4786at 86.235 kb on + strand, within Ac3H11_4786at 86.235 kb on + strand, within Ac3H11_4786at 86.235 kb on + strand, within Ac3H11_4786at 86.236 kb on - strand, within Ac3H11_4786at 86.236 kb on - strand, within Ac3H11_4786at 86.430 kb on + strand, within Ac3H11_4786at 86.431 kb on - strand, within Ac3H11_4786at 86.431 kb on - strand, within Ac3H11_4786at 86.431 kb on - strand, within Ac3H11_4786at 86.431 kb on - strand, within Ac3H11_4786at 86.431 kb on - strand, within Ac3H11_4786at 86.466 kb on + strand, within Ac3H11_4786at 86.466 kb on + strand, within Ac3H11_4786at 86.466 kb on + strand, within Ac3H11_4786at 86.466 kb on + strand, within Ac3H11_4786at 86.466 kb on + strand, within Ac3H11_4786at 86.466 kb on + strand, within Ac3H11_4786at 86.466 kb on + strand, within Ac3H11_4786at 86.466 kb on + strand, within Ac3H11_4786at 86.466 kb on + strand, within Ac3H11_4786at 86.466 kb on + strand, within Ac3H11_4786at 86.467 kb on - strand, within Ac3H11_4786at 86.467 kb on - strand, within Ac3H11_4786at 86.467 kb on - strand, within Ac3H11_4786at 86.467 kb on - strand, within Ac3H11_4786at 86.467 kb on - strand, within Ac3H11_4786at 86.467 kb on - strand, within Ac3H11_4786at 86.467 kb on - strand, within Ac3H11_4786at 86.467 kb on - strand, within Ac3H11_4786at 86.467 kb on - strand, within Ac3H11_4786at 86.553 kb on + strand, within Ac3H11_4786at 86.554 kb on - strand, within Ac3H11_4786at 86.554 kb on - strand, within Ac3H11_4786at 86.554 kb on - strand, within Ac3H11_4786at 86.554 kb on - strand, within Ac3H11_4786at 86.697 kb on + strand, within Ac3H11_4786at 86.697 kb on + strand, within Ac3H11_4786at 86.697 kb on + strand, within Ac3H11_4786at 86.697 kb on + strand, within Ac3H11_4786at 86.697 kb on + strand, within Ac3H11_4786at 86.698 kb on - strand, within Ac3H11_4786at 86.698 kb on - strand, within Ac3H11_4786at 86.698 kb on - strand, within Ac3H11_4786at 86.698 kb on - strand, within Ac3H11_4786at 86.698 kb on - strand, within Ac3H11_4786at 86.698 kb on - strand, within Ac3H11_4786at 86.698 kb on - strand, within Ac3H11_4786at 86.787 kb on + strandat 86.787 kb on + strandat 86.787 kb on + strandat 86.787 kb on + strandat 86.787 kb on + strandat 86.787 kb on + strandat 86.787 kb on + strandat 86.788 kb on - strandat 86.788 kb on - strandat 86.850 kb on + strandat 86.850 kb on + strandat 86.850 kb on + strandat 86.850 kb on + strandat 86.850 kb on + strandat 86.850 kb on + strandat 86.850 kb on + strandat 86.850 kb on + strandat 86.850 kb on + strandat 86.851 kb on - strandat 86.851 kb on - strandat 86.851 kb on - strandat 86.851 kb on - strandat 86.851 kb on - strandat 86.875 kb on + strandat 86.876 kb on - strandat 86.876 kb on - strandat 86.896 kb on + strandat 86.896 kb on + strandat 86.897 kb on - strandat 86.897 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 25 mM
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84,139 + Ac3H11_4784 0.13 +0.2
84,139 + Ac3H11_4784 0.13 +1.0
84,139 + Ac3H11_4784 0.13 +0.2
84,140 - Ac3H11_4784 0.14 +1.0
84,140 - Ac3H11_4784 0.14 -0.5
84,140 - Ac3H11_4784 0.14 +0.4
84,140 - Ac3H11_4784 0.14 +0.9
84,140 - Ac3H11_4784 0.14 +0.9
84,140 - Ac3H11_4784 0.14 +1.7
84,682 + Ac3H11_4784 0.86 +0.6
84,682 + Ac3H11_4784 0.86 +1.2
84,798 + +1.0
84,798 + +0.4
84,798 + +1.2
84,798 + +1.0
84,798 + -0.2
84,798 + +0.8
84,798 + -0.6
84,798 + -0.2
84,798 + +0.7
84,798 + -0.1
84,798 + +1.5
84,798 + +0.7
84,798 + +0.1
84,798 + -0.1
84,799 - +0.4
84,799 - +1.5
84,799 - -0.4
84,799 - +0.3
84,799 - +0.7
84,799 - -0.0
84,799 - +0.6
84,799 - +0.1
84,799 - +0.7
84,799 - +1.0
85,081 + Ac3H11_4785 0.14 +0.2
85,081 + Ac3H11_4785 0.14 -0.4
85,081 + Ac3H11_4785 0.14 +0.2
85,082 - Ac3H11_4785 0.14 +0.3
85,082 - Ac3H11_4785 0.14 +0.3
85,082 - Ac3H11_4785 0.14 -0.3
85,082 - Ac3H11_4785 0.14 -0.3
85,082 - Ac3H11_4785 0.14 -0.0
85,082 - Ac3H11_4785 0.14 -0.5
85,082 - Ac3H11_4785 0.14 +0.3
85,082 - Ac3H11_4785 0.14 +0.2
85,082 - Ac3H11_4785 0.14 -0.2
85,082 - Ac3H11_4785 0.14 +0.4
85,270 + Ac3H11_4785 0.33 -0.0
85,270 + Ac3H11_4785 0.33 +0.2
85,270 + Ac3H11_4785 0.33 +0.2
85,270 + Ac3H11_4785 0.33 +0.2
85,270 + Ac3H11_4785 0.33 +0.9
85,270 + Ac3H11_4785 0.33 +0.0
85,270 + Ac3H11_4785 0.33 +0.5
85,271 - Ac3H11_4785 0.33 +0.7
85,271 - Ac3H11_4785 0.33 +0.9
85,271 - Ac3H11_4785 0.33 -0.0
85,642 + Ac3H11_4785 0.70 +0.3
85,642 + Ac3H11_4785 0.70 +0.7
85,642 + Ac3H11_4785 0.70 +1.2
85,643 - Ac3H11_4785 0.70 -0.2
85,643 - Ac3H11_4785 0.70 +0.2
85,643 - Ac3H11_4785 0.70 +0.7
85,676 - Ac3H11_4785 0.73 -0.2
85,684 + Ac3H11_4785 0.74 +1.1
85,684 + Ac3H11_4785 0.74 -0.3
85,685 - Ac3H11_4785 0.74 -0.2
85,685 - Ac3H11_4785 0.74 +0.5
85,685 - Ac3H11_4785 0.74 +0.4
85,964 - -0.5
85,983 + +1.1
86,010 + -0.4
86,181 + Ac3H11_4786 0.19 -0.4
86,181 + Ac3H11_4786 0.19 -0.0
86,181 + Ac3H11_4786 0.19 +0.3
86,181 + Ac3H11_4786 0.19 -1.1
86,181 + Ac3H11_4786 0.19 -0.4
86,181 + Ac3H11_4786 0.19 -0.3
86,181 + Ac3H11_4786 0.19 -0.1
86,181 + Ac3H11_4786 0.19 +0.3
86,181 + Ac3H11_4786 0.19 -0.6
86,181 + Ac3H11_4786 0.19 +0.1
86,181 + Ac3H11_4786 0.19 -0.0
86,181 + Ac3H11_4786 0.19 +0.3
86,181 + Ac3H11_4786 0.19 +0.2
86,182 - Ac3H11_4786 0.19 +1.2
86,182 - Ac3H11_4786 0.19 +0.5
86,182 - Ac3H11_4786 0.19 +0.3
86,182 - Ac3H11_4786 0.19 +0.5
86,182 - Ac3H11_4786 0.19 +0.5
86,220 + Ac3H11_4786 0.24 -0.0
86,220 + Ac3H11_4786 0.24 +0.7
86,220 + Ac3H11_4786 0.24 +0.2
86,220 + Ac3H11_4786 0.24 +0.0
86,221 - Ac3H11_4786 0.24 +0.4
86,221 - Ac3H11_4786 0.24 +1.2
86,221 - Ac3H11_4786 0.24 +0.3
86,221 - Ac3H11_4786 0.24 +0.1
86,221 - Ac3H11_4786 0.24 +0.9
86,221 - Ac3H11_4786 0.24 +0.2
86,221 - Ac3H11_4786 0.24 -0.8
86,235 + Ac3H11_4786 0.25 -0.7
86,235 + Ac3H11_4786 0.25 +0.1
86,235 + Ac3H11_4786 0.25 +1.1
86,235 + Ac3H11_4786 0.25 +1.8
86,235 + Ac3H11_4786 0.25 +0.4
86,236 - Ac3H11_4786 0.26 +0.1
86,236 - Ac3H11_4786 0.26 -0.3
86,430 + Ac3H11_4786 0.48 +0.4
86,431 - Ac3H11_4786 0.48 -0.0
86,431 - Ac3H11_4786 0.48 -0.2
86,431 - Ac3H11_4786 0.48 +1.1
86,431 - Ac3H11_4786 0.48 +0.1
86,431 - Ac3H11_4786 0.48 -0.1
86,466 + Ac3H11_4786 0.53 +0.5
86,466 + Ac3H11_4786 0.53 +0.0
86,466 + Ac3H11_4786 0.53 +0.3
86,466 + Ac3H11_4786 0.53 +0.2
86,466 + Ac3H11_4786 0.53 -0.0
86,466 + Ac3H11_4786 0.53 -0.1
86,466 + Ac3H11_4786 0.53 -0.4
86,466 + Ac3H11_4786 0.53 +0.7
86,466 + Ac3H11_4786 0.53 +0.6
86,466 + Ac3H11_4786 0.53 -0.4
86,467 - Ac3H11_4786 0.53 +0.9
86,467 - Ac3H11_4786 0.53 +0.3
86,467 - Ac3H11_4786 0.53 +0.3
86,467 - Ac3H11_4786 0.53 -0.7
86,467 - Ac3H11_4786 0.53 +0.6
86,467 - Ac3H11_4786 0.53 +0.2
86,467 - Ac3H11_4786 0.53 +0.1
86,467 - Ac3H11_4786 0.53 +0.3
86,467 - Ac3H11_4786 0.53 -0.4
86,553 + Ac3H11_4786 0.63 +0.3
86,554 - Ac3H11_4786 0.63 +0.2
86,554 - Ac3H11_4786 0.63 -0.2
86,554 - Ac3H11_4786 0.63 -0.3
86,554 - Ac3H11_4786 0.63 +0.6
86,697 + Ac3H11_4786 0.80 +1.0
86,697 + Ac3H11_4786 0.80 -0.4
86,697 + Ac3H11_4786 0.80 -0.1
86,697 + Ac3H11_4786 0.80 -0.0
86,697 + Ac3H11_4786 0.80 -0.0
86,698 - Ac3H11_4786 0.80 +0.3
86,698 - Ac3H11_4786 0.80 +0.3
86,698 - Ac3H11_4786 0.80 -0.1
86,698 - Ac3H11_4786 0.80 -0.1
86,698 - Ac3H11_4786 0.80 +0.4
86,698 - Ac3H11_4786 0.80 +0.7
86,698 - Ac3H11_4786 0.80 +0.2
86,787 + -0.1
86,787 + -0.6
86,787 + +1.1
86,787 + +0.9
86,787 + -0.7
86,787 + +0.1
86,787 + +0.3
86,788 - +0.5
86,788 - +0.3
86,850 + +0.1
86,850 + +0.2
86,850 + +0.6
86,850 + -0.6
86,850 + +0.8
86,850 + +0.2
86,850 + +0.6
86,850 + +0.2
86,850 + +0.1
86,851 - +0.2
86,851 - +0.1
86,851 - -0.3
86,851 - -0.3
86,851 - +0.1
86,875 + +0.3
86,876 - -1.8
86,876 - +0.9
86,896 + +0.1
86,896 + -1.1
86,897 - +0.1
86,897 - +0.4

Or see this region's nucleotide sequence