Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4735

Experiment: sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4733 and Ac3H11_4734 are separated by 88 nucleotidesAc3H11_4734 and Ac3H11_4735 are separated by 249 nucleotidesAc3H11_4735 and Ac3H11_4736 are separated by 6 nucleotidesAc3H11_4736 and Ac3H11_4737 overlap by 4 nucleotidesAc3H11_4737 and Ac3H11_4738 overlap by 8 nucleotides Ac3H11_4733 - Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-), at 40,881 to 41,633 _4733 Ac3H11_4734 - hypothetical protein, at 41,722 to 42,270 _4734 Ac3H11_4735 - Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19), at 42,520 to 42,909 _4735 Ac3H11_4736 - Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 42,916 to 43,290 _4736 Ac3H11_4737 - Probable transmembrane protein, at 43,287 to 43,673 _4737 Ac3H11_4738 - Ferredoxin reductase, at 43,666 to 44,715 _4738 Position (kb) 42 43Strain fitness (log2 ratio) -3 -2 -1 0 1at 42.017 kb on + strand, within Ac3H11_4734at 42.067 kb on + strand, within Ac3H11_4734at 42.067 kb on + strand, within Ac3H11_4734at 42.067 kb on + strand, within Ac3H11_4734at 42.067 kb on + strand, within Ac3H11_4734at 42.068 kb on - strand, within Ac3H11_4734at 42.196 kb on + strand, within Ac3H11_4734at 42.214 kb on + strand, within Ac3H11_4734at 42.214 kb on + strand, within Ac3H11_4734at 42.214 kb on + strand, within Ac3H11_4734at 42.214 kb on + strand, within Ac3H11_4734at 42.214 kb on + strand, within Ac3H11_4734at 42.214 kb on + strand, within Ac3H11_4734at 42.214 kb on + strand, within Ac3H11_4734at 42.215 kb on - strand, within Ac3H11_4734at 42.215 kb on - strand, within Ac3H11_4734at 42.215 kb on - strand, within Ac3H11_4734at 42.268 kb on + strandat 42.273 kb on - strandat 42.273 kb on - strandat 42.312 kb on + strandat 42.312 kb on + strandat 42.313 kb on - strandat 42.313 kb on - strandat 42.313 kb on - strandat 42.316 kb on + strandat 42.317 kb on - strandat 42.317 kb on - strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.907 kb on + strandat 42.907 kb on + strandat 42.907 kb on + strandat 42.907 kb on + strandat 42.907 kb on + strandat 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.617 kb on + strand, within Ac3H11_4737at 43.692 kb on + strandat 43.692 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 25 mM
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42,017 + Ac3H11_4734 0.54 -0.2
42,067 + Ac3H11_4734 0.63 -0.7
42,067 + Ac3H11_4734 0.63 +0.2
42,067 + Ac3H11_4734 0.63 +0.2
42,067 + Ac3H11_4734 0.63 -0.2
42,068 - Ac3H11_4734 0.63 +0.4
42,196 + Ac3H11_4734 0.86 -0.9
42,214 + Ac3H11_4734 0.90 -0.1
42,214 + Ac3H11_4734 0.90 -1.0
42,214 + Ac3H11_4734 0.90 +0.4
42,214 + Ac3H11_4734 0.90 +0.0
42,214 + Ac3H11_4734 0.90 -0.9
42,214 + Ac3H11_4734 0.90 -0.6
42,214 + Ac3H11_4734 0.90 -0.0
42,215 - Ac3H11_4734 0.90 +0.1
42,215 - Ac3H11_4734 0.90 -0.9
42,215 - Ac3H11_4734 0.90 -1.8
42,268 + -0.1
42,273 - -0.1
42,273 - +1.2
42,312 + -0.3
42,312 + +0.3
42,313 - -1.5
42,313 - -0.5
42,313 - +0.4
42,316 + -0.0
42,317 - -1.5
42,317 - +1.2
42,901 + -1.0
42,901 + +0.1
42,901 + -0.3
42,901 + -0.3
42,901 + -1.4
42,901 + -0.1
42,901 + -0.2
42,901 + +0.7
42,907 + -0.6
42,907 + -0.4
42,907 + -0.7
42,907 + -0.9
42,907 + -0.8
43,359 + Ac3H11_4737 0.19 +0.3
43,359 + Ac3H11_4737 0.19 +0.5
43,359 + Ac3H11_4737 0.19 -1.9
43,359 + Ac3H11_4737 0.19 -1.4
43,359 + Ac3H11_4737 0.19 -0.9
43,359 + Ac3H11_4737 0.19 -0.6
43,359 + Ac3H11_4737 0.19 +0.6
43,359 + Ac3H11_4737 0.19 -0.7
43,359 + Ac3H11_4737 0.19 -1.6
43,359 + Ac3H11_4737 0.19 +0.6
43,359 + Ac3H11_4737 0.19 -3.4
43,359 + Ac3H11_4737 0.19 -0.2
43,359 + Ac3H11_4737 0.19 -1.7
43,359 + Ac3H11_4737 0.19 -0.7
43,359 + Ac3H11_4737 0.19 +0.2
43,359 + Ac3H11_4737 0.19 -1.5
43,359 + Ac3H11_4737 0.19 -0.8
43,359 + Ac3H11_4737 0.19 +0.4
43,359 + Ac3H11_4737 0.19 -0.7
43,360 - Ac3H11_4737 0.19 -2.0
43,360 - Ac3H11_4737 0.19 -1.5
43,360 - Ac3H11_4737 0.19 -0.2
43,360 - Ac3H11_4737 0.19 -1.1
43,360 - Ac3H11_4737 0.19 -0.1
43,360 - Ac3H11_4737 0.19 -0.4
43,360 - Ac3H11_4737 0.19 -0.1
43,360 - Ac3H11_4737 0.19 -1.4
43,360 - Ac3H11_4737 0.19 -2.3
43,360 - Ac3H11_4737 0.19 -0.5
43,360 - Ac3H11_4737 0.19 -0.7
43,360 - Ac3H11_4737 0.19 +0.1
43,360 - Ac3H11_4737 0.19 -1.4
43,360 - Ac3H11_4737 0.19 +0.6
43,360 - Ac3H11_4737 0.19 -1.2
43,360 - Ac3H11_4737 0.19 -0.6
43,360 - Ac3H11_4737 0.19 +0.4
43,360 - Ac3H11_4737 0.19 -1.0
43,360 - Ac3H11_4737 0.19 +0.0
43,536 + Ac3H11_4737 0.64 -0.8
43,536 + Ac3H11_4737 0.64 -0.6
43,536 + Ac3H11_4737 0.64 +0.2
43,536 + Ac3H11_4737 0.64 +1.5
43,536 + Ac3H11_4737 0.64 -1.3
43,536 + Ac3H11_4737 0.64 +0.2
43,536 + Ac3H11_4737 0.64 -1.2
43,536 + Ac3H11_4737 0.64 -0.1
43,536 + Ac3H11_4737 0.64 +0.4
43,536 + Ac3H11_4737 0.64 -0.6
43,536 + Ac3H11_4737 0.64 -0.3
43,536 + Ac3H11_4737 0.64 -0.2
43,536 + Ac3H11_4737 0.64 -1.1
43,536 + Ac3H11_4737 0.64 -0.0
43,536 + Ac3H11_4737 0.64 +1.3
43,536 + Ac3H11_4737 0.64 -1.7
43,536 + Ac3H11_4737 0.64 -2.7
43,536 + Ac3H11_4737 0.64 -0.1
43,537 - Ac3H11_4737 0.65 +0.1
43,537 - Ac3H11_4737 0.65 +0.2
43,537 - Ac3H11_4737 0.65 -0.7
43,537 - Ac3H11_4737 0.65 -0.6
43,537 - Ac3H11_4737 0.65 -0.7
43,537 - Ac3H11_4737 0.65 +1.7
43,537 - Ac3H11_4737 0.65 -0.0
43,537 - Ac3H11_4737 0.65 +0.4
43,537 - Ac3H11_4737 0.65 -0.4
43,537 - Ac3H11_4737 0.65 +0.4
43,537 - Ac3H11_4737 0.65 -0.7
43,617 + Ac3H11_4737 0.85 -1.4
43,692 + -2.2
43,692 + +0.1

Or see this region's nucleotide sequence