Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4490

Experiment: sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4489 and Ac3H11_4490 are separated by 331 nucleotidesAc3H11_4490 and Ac3H11_4491 are separated by 21 nucleotides Ac3H11_4489 - Nitrate/nitrite response regulator protein, at 77,963 to 78,664 _4489 Ac3H11_4490 - Nitrate/nitrite transporter, at 78,996 to 80,288 _4490 Ac3H11_4491 - Nitrate/nitrite transporter, at 80,310 to 81,719 _4491 Position (kb) 78 79 80 81Strain fitness (log2 ratio) -2 -1 0 1 2 3at 78.635 kb on + strandat 78.635 kb on + strandat 78.636 kb on - strandat 78.636 kb on - strandat 78.636 kb on - strandat 78.840 kb on + strandat 78.840 kb on + strandat 78.841 kb on - strandat 78.841 kb on - strandat 78.884 kb on + strandat 78.884 kb on + strandat 78.884 kb on + strandat 78.884 kb on + strandat 78.885 kb on - strandat 78.885 kb on - strandat 78.885 kb on - strandat 78.950 kb on + strandat 78.951 kb on - strandat 78.958 kb on + strandat 78.963 kb on + strandat 78.963 kb on + strandat 79.305 kb on + strand, within Ac3H11_4490at 79.305 kb on + strand, within Ac3H11_4490at 79.306 kb on - strand, within Ac3H11_4490at 79.306 kb on - strand, within Ac3H11_4490at 79.306 kb on - strand, within Ac3H11_4490at 79.317 kb on + strand, within Ac3H11_4490at 79.379 kb on + strand, within Ac3H11_4490at 79.380 kb on - strand, within Ac3H11_4490at 79.386 kb on + strand, within Ac3H11_4490at 79.386 kb on + strand, within Ac3H11_4490at 79.386 kb on + strand, within Ac3H11_4490at 79.386 kb on + strand, within Ac3H11_4490at 79.386 kb on + strand, within Ac3H11_4490at 79.387 kb on - strand, within Ac3H11_4490at 79.387 kb on - strand, within Ac3H11_4490at 79.527 kb on + strand, within Ac3H11_4490at 79.527 kb on + strand, within Ac3H11_4490at 79.528 kb on - strand, within Ac3H11_4490at 79.528 kb on - strand, within Ac3H11_4490at 79.528 kb on - strand, within Ac3H11_4490at 79.659 kb on + strand, within Ac3H11_4490at 79.659 kb on + strand, within Ac3H11_4490at 79.660 kb on - strand, within Ac3H11_4490at 79.660 kb on - strand, within Ac3H11_4490at 79.660 kb on - strand, within Ac3H11_4490at 79.668 kb on + strand, within Ac3H11_4490at 79.668 kb on + strand, within Ac3H11_4490at 79.668 kb on + strand, within Ac3H11_4490at 79.669 kb on - strand, within Ac3H11_4490at 79.669 kb on - strand, within Ac3H11_4490at 79.669 kb on - strand, within Ac3H11_4490at 79.671 kb on + strand, within Ac3H11_4490at 79.671 kb on + strand, within Ac3H11_4490at 79.671 kb on + strand, within Ac3H11_4490at 79.671 kb on + strand, within Ac3H11_4490at 79.671 kb on + strand, within Ac3H11_4490at 79.672 kb on - strand, within Ac3H11_4490at 79.692 kb on + strand, within Ac3H11_4490at 79.693 kb on - strand, within Ac3H11_4490at 79.722 kb on + strand, within Ac3H11_4490at 79.722 kb on + strand, within Ac3H11_4490at 79.723 kb on - strand, within Ac3H11_4490at 79.723 kb on - strand, within Ac3H11_4490at 79.723 kb on - strand, within Ac3H11_4490at 79.723 kb on - strand, within Ac3H11_4490at 79.723 kb on - strand, within Ac3H11_4490at 79.723 kb on - strand, within Ac3H11_4490at 79.725 kb on + strand, within Ac3H11_4490at 79.725 kb on + strand, within Ac3H11_4490at 79.725 kb on + strand, within Ac3H11_4490at 79.725 kb on + strand, within Ac3H11_4490at 79.725 kb on + strand, within Ac3H11_4490at 79.725 kb on + strand, within Ac3H11_4490at 79.726 kb on - strand, within Ac3H11_4490at 79.726 kb on - strand, within Ac3H11_4490at 79.726 kb on - strand, within Ac3H11_4490at 79.726 kb on - strand, within Ac3H11_4490at 79.726 kb on - strand, within Ac3H11_4490at 79.726 kb on - strand, within Ac3H11_4490at 79.738 kb on - strand, within Ac3H11_4490at 79.738 kb on - strand, within Ac3H11_4490at 79.738 kb on - strand, within Ac3H11_4490at 79.833 kb on + strand, within Ac3H11_4490at 79.833 kb on + strand, within Ac3H11_4490at 79.833 kb on + strand, within Ac3H11_4490at 79.833 kb on + strand, within Ac3H11_4490at 79.833 kb on + strand, within Ac3H11_4490at 79.833 kb on + strand, within Ac3H11_4490at 79.834 kb on - strand, within Ac3H11_4490at 79.968 kb on + strand, within Ac3H11_4490at 79.968 kb on + strand, within Ac3H11_4490at 79.968 kb on + strand, within Ac3H11_4490at 79.968 kb on + strand, within Ac3H11_4490at 79.968 kb on + strand, within Ac3H11_4490at 79.968 kb on + strand, within Ac3H11_4490at 79.969 kb on - strand, within Ac3H11_4490at 79.969 kb on - strand, within Ac3H11_4490at 79.969 kb on - strand, within Ac3H11_4490at 79.969 kb on - strand, within Ac3H11_4490at 79.969 kb on - strand, within Ac3H11_4490at 80.037 kb on + strand, within Ac3H11_4490at 80.038 kb on - strand, within Ac3H11_4490at 80.038 kb on - strand, within Ac3H11_4490at 80.038 kb on - strand, within Ac3H11_4490at 80.184 kb on + strandat 80.184 kb on + strandat 80.184 kb on + strandat 80.184 kb on + strandat 80.185 kb on - strandat 80.185 kb on - strandat 80.185 kb on - strandat 80.185 kb on - strandat 80.185 kb on - strandat 80.218 kb on - strandat 80.218 kb on - strandat 80.511 kb on + strand, within Ac3H11_4491at 80.511 kb on + strand, within Ac3H11_4491at 80.511 kb on + strand, within Ac3H11_4491at 80.512 kb on - strand, within Ac3H11_4491at 80.581 kb on - strand, within Ac3H11_4491at 80.581 kb on - strand, within Ac3H11_4491at 81.022 kb on - strand, within Ac3H11_4491at 81.102 kb on + strand, within Ac3H11_4491at 81.132 kb on + strand, within Ac3H11_4491at 81.133 kb on - strand, within Ac3H11_4491at 81.192 kb on + strand, within Ac3H11_4491at 81.193 kb on - strand, within Ac3H11_4491at 81.193 kb on - strand, within Ac3H11_4491

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 25 mM
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78,635 + -1.2
78,635 + +2.8
78,636 - -0.1
78,636 - -0.6
78,636 - +0.1
78,840 + +0.7
78,840 + -0.4
78,841 - -0.1
78,841 - -0.4
78,884 + -0.0
78,884 + -0.1
78,884 + -0.4
78,884 + +0.5
78,885 - -1.4
78,885 - -1.0
78,885 - -0.9
78,950 + +0.7
78,951 - -0.2
78,958 + -0.3
78,963 + +1.0
78,963 + -0.6
79,305 + Ac3H11_4490 0.24 +0.6
79,305 + Ac3H11_4490 0.24 -0.4
79,306 - Ac3H11_4490 0.24 -0.5
79,306 - Ac3H11_4490 0.24 +0.2
79,306 - Ac3H11_4490 0.24 -0.4
79,317 + Ac3H11_4490 0.25 +0.3
79,379 + Ac3H11_4490 0.30 -0.5
79,380 - Ac3H11_4490 0.30 +0.0
79,386 + Ac3H11_4490 0.30 -0.5
79,386 + Ac3H11_4490 0.30 +0.4
79,386 + Ac3H11_4490 0.30 +0.9
79,386 + Ac3H11_4490 0.30 -0.1
79,386 + Ac3H11_4490 0.30 +0.1
79,387 - Ac3H11_4490 0.30 -0.2
79,387 - Ac3H11_4490 0.30 +0.3
79,527 + Ac3H11_4490 0.41 -0.4
79,527 + Ac3H11_4490 0.41 +0.2
79,528 - Ac3H11_4490 0.41 +0.8
79,528 - Ac3H11_4490 0.41 +0.6
79,528 - Ac3H11_4490 0.41 -0.1
79,659 + Ac3H11_4490 0.51 -0.5
79,659 + Ac3H11_4490 0.51 -0.5
79,660 - Ac3H11_4490 0.51 -1.9
79,660 - Ac3H11_4490 0.51 +0.1
79,660 - Ac3H11_4490 0.51 -0.4
79,668 + Ac3H11_4490 0.52 -0.7
79,668 + Ac3H11_4490 0.52 +0.5
79,668 + Ac3H11_4490 0.52 -0.0
79,669 - Ac3H11_4490 0.52 +0.1
79,669 - Ac3H11_4490 0.52 +0.2
79,669 - Ac3H11_4490 0.52 -0.1
79,671 + Ac3H11_4490 0.52 -0.5
79,671 + Ac3H11_4490 0.52 +0.3
79,671 + Ac3H11_4490 0.52 +0.2
79,671 + Ac3H11_4490 0.52 +0.6
79,671 + Ac3H11_4490 0.52 -0.2
79,672 - Ac3H11_4490 0.52 -1.5
79,692 + Ac3H11_4490 0.54 +0.4
79,693 - Ac3H11_4490 0.54 +0.7
79,722 + Ac3H11_4490 0.56 +0.6
79,722 + Ac3H11_4490 0.56 +0.4
79,723 - Ac3H11_4490 0.56 -0.1
79,723 - Ac3H11_4490 0.56 -0.0
79,723 - Ac3H11_4490 0.56 +0.4
79,723 - Ac3H11_4490 0.56 +0.3
79,723 - Ac3H11_4490 0.56 +0.5
79,723 - Ac3H11_4490 0.56 -0.5
79,725 + Ac3H11_4490 0.56 +0.3
79,725 + Ac3H11_4490 0.56 +0.2
79,725 + Ac3H11_4490 0.56 -0.2
79,725 + Ac3H11_4490 0.56 +0.1
79,725 + Ac3H11_4490 0.56 -0.1
79,725 + Ac3H11_4490 0.56 +1.2
79,726 - Ac3H11_4490 0.56 -0.9
79,726 - Ac3H11_4490 0.56 -0.3
79,726 - Ac3H11_4490 0.56 -0.1
79,726 - Ac3H11_4490 0.56 -0.9
79,726 - Ac3H11_4490 0.56 -0.4
79,726 - Ac3H11_4490 0.56 -1.6
79,738 - Ac3H11_4490 0.57 -0.6
79,738 - Ac3H11_4490 0.57 -0.7
79,738 - Ac3H11_4490 0.57 +0.0
79,833 + Ac3H11_4490 0.65 -0.1
79,833 + Ac3H11_4490 0.65 -0.6
79,833 + Ac3H11_4490 0.65 -0.4
79,833 + Ac3H11_4490 0.65 -0.2
79,833 + Ac3H11_4490 0.65 -0.3
79,833 + Ac3H11_4490 0.65 -1.1
79,834 - Ac3H11_4490 0.65 -0.8
79,968 + Ac3H11_4490 0.75 -0.9
79,968 + Ac3H11_4490 0.75 -0.7
79,968 + Ac3H11_4490 0.75 +2.0
79,968 + Ac3H11_4490 0.75 +0.1
79,968 + Ac3H11_4490 0.75 +0.2
79,968 + Ac3H11_4490 0.75 -0.0
79,969 - Ac3H11_4490 0.75 -0.1
79,969 - Ac3H11_4490 0.75 -0.4
79,969 - Ac3H11_4490 0.75 -0.2
79,969 - Ac3H11_4490 0.75 +0.1
79,969 - Ac3H11_4490 0.75 -0.5
80,037 + Ac3H11_4490 0.81 +0.3
80,038 - Ac3H11_4490 0.81 +1.9
80,038 - Ac3H11_4490 0.81 -0.4
80,038 - Ac3H11_4490 0.81 +0.6
80,184 + +0.1
80,184 + -0.5
80,184 + -0.1
80,184 + +1.2
80,185 - +0.3
80,185 - +0.4
80,185 - -0.1
80,185 - +0.4
80,185 - -0.7
80,218 - +0.3
80,218 - +0.4
80,511 + Ac3H11_4491 0.14 +0.4
80,511 + Ac3H11_4491 0.14 +0.6
80,511 + Ac3H11_4491 0.14 -0.8
80,512 - Ac3H11_4491 0.14 -0.2
80,581 - Ac3H11_4491 0.19 +0.1
80,581 - Ac3H11_4491 0.19 +0.5
81,022 - Ac3H11_4491 0.50 +0.3
81,102 + Ac3H11_4491 0.56 +0.4
81,132 + Ac3H11_4491 0.58 +0.2
81,133 - Ac3H11_4491 0.58 +1.2
81,192 + Ac3H11_4491 0.63 +0.4
81,193 - Ac3H11_4491 0.63 +0.2
81,193 - Ac3H11_4491 0.63 -0.8

Or see this region's nucleotide sequence