Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3237

Experiment: sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3236 and Ac3H11_3237 are separated by 20 nucleotidesAc3H11_3237 and Ac3H11_3238 are separated by 54 nucleotidesAc3H11_3238 and Ac3H11_3239 are separated by 118 nucleotides Ac3H11_3236 - Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4), at 144,192 to 146,639 _3236 Ac3H11_3237 - Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family), at 146,660 to 147,472 _3237 Ac3H11_3238 - Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4), at 147,527 to 147,928 _3238 Ac3H11_3239 - Assimilatory nitrate reductase large subunit (EC:1.7.99.4), at 148,047 to 150,884 _3239 Position (kb) 146 147 148Strain fitness (log2 ratio) -2 -1 0 1at 145.809 kb on + strand, within Ac3H11_3236at 145.809 kb on + strand, within Ac3H11_3236at 145.810 kb on - strand, within Ac3H11_3236at 145.812 kb on + strand, within Ac3H11_3236at 145.813 kb on - strand, within Ac3H11_3236at 145.813 kb on - strand, within Ac3H11_3236at 145.813 kb on - strand, within Ac3H11_3236at 145.813 kb on - strand, within Ac3H11_3236at 145.813 kb on - strand, within Ac3H11_3236at 145.813 kb on - strand, within Ac3H11_3236at 145.908 kb on + strand, within Ac3H11_3236at 145.908 kb on + strand, within Ac3H11_3236at 145.908 kb on + strand, within Ac3H11_3236at 145.909 kb on - strand, within Ac3H11_3236at 145.986 kb on + strand, within Ac3H11_3236at 145.986 kb on + strand, within Ac3H11_3236at 145.986 kb on + strand, within Ac3H11_3236at 145.987 kb on - strand, within Ac3H11_3236at 145.987 kb on - strand, within Ac3H11_3236at 145.987 kb on - strand, within Ac3H11_3236at 145.987 kb on - strand, within Ac3H11_3236at 145.987 kb on - strand, within Ac3H11_3236at 146.100 kb on + strand, within Ac3H11_3236at 146.214 kb on + strand, within Ac3H11_3236at 146.215 kb on - strand, within Ac3H11_3236at 146.215 kb on - strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.322 kb on + strand, within Ac3H11_3236at 146.323 kb on - strand, within Ac3H11_3236at 146.323 kb on - strand, within Ac3H11_3236at 146.323 kb on - strand, within Ac3H11_3236at 146.323 kb on - strand, within Ac3H11_3236at 146.323 kb on - strand, within Ac3H11_3236at 146.323 kb on - strand, within Ac3H11_3236at 146.323 kb on - strand, within Ac3H11_3236at 146.446 kb on - strandat 146.446 kb on - strandat 146.466 kb on + strandat 146.467 kb on - strandat 146.490 kb on + strandat 146.954 kb on + strand, within Ac3H11_3237at 146.954 kb on + strand, within Ac3H11_3237at 146.955 kb on - strand, within Ac3H11_3237at 146.955 kb on - strand, within Ac3H11_3237at 147.452 kb on + strandat 147.452 kb on + strandat 147.452 kb on + strandat 147.453 kb on - strandat 147.453 kb on - strandat 147.453 kb on - strandat 147.453 kb on - strandat 147.453 kb on - strandat 147.842 kb on + strand, within Ac3H11_3238at 147.842 kb on + strand, within Ac3H11_3238at 147.981 kb on + strandat 147.982 kb on - strandat 148.084 kb on + strandat 148.365 kb on + strand, within Ac3H11_3239at 148.365 kb on + strand, within Ac3H11_3239at 148.395 kb on + strand, within Ac3H11_3239at 148.395 kb on + strand, within Ac3H11_3239at 148.396 kb on - strand, within Ac3H11_3239at 148.396 kb on - strand, within Ac3H11_3239at 148.396 kb on - strand, within Ac3H11_3239at 148.396 kb on - strand, within Ac3H11_3239at 148.398 kb on + strand, within Ac3H11_3239at 148.398 kb on + strand, within Ac3H11_3239at 148.398 kb on + strand, within Ac3H11_3239at 148.398 kb on + strand, within Ac3H11_3239at 148.399 kb on - strand, within Ac3H11_3239

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 25 mM
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145,809 + Ac3H11_3236 0.66 +0.1
145,809 + Ac3H11_3236 0.66 +0.2
145,810 - Ac3H11_3236 0.66 +0.8
145,812 + Ac3H11_3236 0.66 -0.1
145,813 - Ac3H11_3236 0.66 -0.6
145,813 - Ac3H11_3236 0.66 -0.8
145,813 - Ac3H11_3236 0.66 +0.1
145,813 - Ac3H11_3236 0.66 +0.3
145,813 - Ac3H11_3236 0.66 -1.1
145,813 - Ac3H11_3236 0.66 -0.4
145,908 + Ac3H11_3236 0.70 +0.5
145,908 + Ac3H11_3236 0.70 -0.5
145,908 + Ac3H11_3236 0.70 -0.5
145,909 - Ac3H11_3236 0.70 -1.8
145,986 + Ac3H11_3236 0.73 +0.7
145,986 + Ac3H11_3236 0.73 -0.5
145,986 + Ac3H11_3236 0.73 -0.1
145,987 - Ac3H11_3236 0.73 -0.7
145,987 - Ac3H11_3236 0.73 -1.4
145,987 - Ac3H11_3236 0.73 -0.6
145,987 - Ac3H11_3236 0.73 -0.6
145,987 - Ac3H11_3236 0.73 -1.0
146,100 + Ac3H11_3236 0.78 +0.2
146,214 + Ac3H11_3236 0.83 -0.3
146,215 - Ac3H11_3236 0.83 +1.1
146,215 - Ac3H11_3236 0.83 +0.4
146,322 + Ac3H11_3236 0.87 -0.4
146,322 + Ac3H11_3236 0.87 -1.0
146,322 + Ac3H11_3236 0.87 -0.1
146,322 + Ac3H11_3236 0.87 +0.6
146,322 + Ac3H11_3236 0.87 -0.6
146,322 + Ac3H11_3236 0.87 +0.1
146,322 + Ac3H11_3236 0.87 -1.3
146,322 + Ac3H11_3236 0.87 +0.3
146,322 + Ac3H11_3236 0.87 +1.3
146,322 + Ac3H11_3236 0.87 -0.7
146,323 - Ac3H11_3236 0.87 +0.0
146,323 - Ac3H11_3236 0.87 -0.1
146,323 - Ac3H11_3236 0.87 +0.5
146,323 - Ac3H11_3236 0.87 -0.9
146,323 - Ac3H11_3236 0.87 -0.3
146,323 - Ac3H11_3236 0.87 -0.3
146,323 - Ac3H11_3236 0.87 +0.3
146,446 - +0.1
146,446 - +0.2
146,466 + -0.3
146,467 - -0.1
146,490 + -0.2
146,954 + Ac3H11_3237 0.36 -0.3
146,954 + Ac3H11_3237 0.36 +0.8
146,955 - Ac3H11_3237 0.36 +0.2
146,955 - Ac3H11_3237 0.36 +0.1
147,452 + +1.4
147,452 + -0.6
147,452 + +0.7
147,453 - -0.2
147,453 - -0.9
147,453 - +1.2
147,453 - -0.1
147,453 - +1.0
147,842 + Ac3H11_3238 0.78 +0.1
147,842 + Ac3H11_3238 0.78 +0.7
147,981 + +0.3
147,982 - +0.7
148,084 + -0.3
148,365 + Ac3H11_3239 0.11 +0.6
148,365 + Ac3H11_3239 0.11 +1.1
148,395 + Ac3H11_3239 0.12 +0.3
148,395 + Ac3H11_3239 0.12 +0.2
148,396 - Ac3H11_3239 0.12 +0.0
148,396 - Ac3H11_3239 0.12 -0.9
148,396 - Ac3H11_3239 0.12 -0.5
148,396 - Ac3H11_3239 0.12 -0.5
148,398 + Ac3H11_3239 0.12 -0.5
148,398 + Ac3H11_3239 0.12 -1.8
148,398 + Ac3H11_3239 0.12 +0.0
148,398 + Ac3H11_3239 0.12 -0.5
148,399 - Ac3H11_3239 0.12 +0.7

Or see this region's nucleotide sequence