Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21540

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21535 and AO353_21540 overlap by 17 nucleotidesAO353_21540 and AO353_21545 are separated by 15 nucleotidesAO353_21545 and AO353_21550 are separated by 74 nucleotides AO353_21535: AO353_21535 - type VI secretion system protein ImpG, at 4,714,207 to 4,715,997 _21535 AO353_21540: AO353_21540 - type VI secretion protein, at 4,715,981 to 4,716,424 _21540 AO353_21545: AO353_21545 - type VI secretion effector protein (Hcp), at 4,716,440 to 4,716,940 _21545 AO353_21550: AO353_21550 - EvpB family type VI secretion protein, at 4,717,015 to 4,718,502 _21550 Position (kb) 4715 4716 4717Strain fitness (log2 ratio) -2 -1 0 1at 4715.104 kb on + strand, within AO353_21535at 4715.104 kb on + strand, within AO353_21535at 4715.104 kb on + strand, within AO353_21535at 4715.104 kb on + strand, within AO353_21535at 4715.105 kb on - strand, within AO353_21535at 4715.105 kb on - strand, within AO353_21535at 4715.105 kb on - strand, within AO353_21535at 4715.144 kb on + strand, within AO353_21535at 4715.144 kb on + strand, within AO353_21535at 4715.144 kb on + strand, within AO353_21535at 4715.144 kb on + strand, within AO353_21535at 4715.144 kb on + strand, within AO353_21535at 4715.144 kb on + strand, within AO353_21535at 4715.145 kb on - strand, within AO353_21535at 4715.145 kb on - strand, within AO353_21535at 4715.145 kb on - strand, within AO353_21535at 4715.145 kb on - strand, within AO353_21535at 4715.145 kb on - strand, within AO353_21535at 4715.150 kb on + strand, within AO353_21535at 4715.150 kb on + strand, within AO353_21535at 4715.151 kb on - strand, within AO353_21535at 4715.151 kb on - strand, within AO353_21535at 4715.225 kb on + strand, within AO353_21535at 4715.225 kb on + strand, within AO353_21535at 4715.226 kb on - strand, within AO353_21535at 4715.387 kb on + strand, within AO353_21535at 4715.598 kb on + strand, within AO353_21535at 4715.599 kb on - strand, within AO353_21535at 4715.747 kb on + strand, within AO353_21535at 4715.783 kb on + strand, within AO353_21535at 4715.783 kb on + strand, within AO353_21535at 4715.784 kb on - strand, within AO353_21535at 4715.960 kb on + strandat 4715.960 kb on + strandat 4715.961 kb on - strandat 4715.963 kb on + strandat 4715.963 kb on + strandat 4715.964 kb on - strandat 4715.964 kb on - strandat 4716.068 kb on + strand, within AO353_21540at 4716.068 kb on + strand, within AO353_21540at 4716.069 kb on - strand, within AO353_21540at 4716.088 kb on + strand, within AO353_21540at 4716.246 kb on + strand, within AO353_21540at 4716.247 kb on - strand, within AO353_21540at 4716.253 kb on + strand, within AO353_21540at 4716.502 kb on + strand, within AO353_21545at 4716.502 kb on + strand, within AO353_21545at 4716.503 kb on - strand, within AO353_21545at 4716.503 kb on - strand, within AO353_21545at 4716.584 kb on - strand, within AO353_21545at 4716.630 kb on + strand, within AO353_21545at 4716.630 kb on + strand, within AO353_21545at 4716.631 kb on - strand, within AO353_21545at 4716.799 kb on + strand, within AO353_21545at 4716.799 kb on + strand, within AO353_21545at 4716.800 kb on - strand, within AO353_21545at 4716.800 kb on - strand, within AO353_21545at 4716.852 kb on + strand, within AO353_21545at 4716.853 kb on - strand, within AO353_21545at 4716.853 kb on - strand, within AO353_21545at 4716.969 kb on + strandat 4716.969 kb on + strandat 4716.973 kb on + strandat 4716.974 kb on - strandat 4716.974 kb on - strandat 4716.974 kb on - strandat 4717.214 kb on + strand, within AO353_21550at 4717.215 kb on - strand, within AO353_21550at 4717.238 kb on + strand, within AO353_21550at 4717.239 kb on - strand, within AO353_21550at 4717.239 kb on - strand, within AO353_21550at 4717.239 kb on - strand, within AO353_21550at 4717.239 kb on - strand, within AO353_21550at 4717.301 kb on + strand, within AO353_21550at 4717.301 kb on + strand, within AO353_21550at 4717.302 kb on - strand, within AO353_21550at 4717.302 kb on - strand, within AO353_21550at 4717.331 kb on + strand, within AO353_21550at 4717.331 kb on + strand, within AO353_21550at 4717.332 kb on - strand, within AO353_21550at 4717.332 kb on - strand, within AO353_21550at 4717.332 kb on - strand, within AO353_21550at 4717.383 kb on - strand, within AO353_21550

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,715,104 + AO353_21535 0.50 +0.0
4,715,104 + AO353_21535 0.50 +0.7
4,715,104 + AO353_21535 0.50 -0.4
4,715,104 + AO353_21535 0.50 -1.3
4,715,105 - AO353_21535 0.50 +0.1
4,715,105 - AO353_21535 0.50 -1.1
4,715,105 - AO353_21535 0.50 +0.0
4,715,144 + AO353_21535 0.52 +0.9
4,715,144 + AO353_21535 0.52 -0.9
4,715,144 + AO353_21535 0.52 +1.1
4,715,144 + AO353_21535 0.52 +0.5
4,715,144 + AO353_21535 0.52 -0.6
4,715,144 + AO353_21535 0.52 -0.1
4,715,145 - AO353_21535 0.52 +0.1
4,715,145 - AO353_21535 0.52 +0.2
4,715,145 - AO353_21535 0.52 +0.1
4,715,145 - AO353_21535 0.52 -0.1
4,715,145 - AO353_21535 0.52 -0.2
4,715,150 + AO353_21535 0.53 +0.3
4,715,150 + AO353_21535 0.53 +0.4
4,715,151 - AO353_21535 0.53 -0.2
4,715,151 - AO353_21535 0.53 +1.0
4,715,225 + AO353_21535 0.57 -1.8
4,715,225 + AO353_21535 0.57 +0.1
4,715,226 - AO353_21535 0.57 +0.6
4,715,387 + AO353_21535 0.66 +0.1
4,715,598 + AO353_21535 0.78 +0.3
4,715,599 - AO353_21535 0.78 -0.3
4,715,747 + AO353_21535 0.86 +1.0
4,715,783 + AO353_21535 0.88 +0.4
4,715,783 + AO353_21535 0.88 -0.4
4,715,784 - AO353_21535 0.88 -0.5
4,715,960 + -0.4
4,715,960 + -1.4
4,715,961 - +0.2
4,715,963 + +0.4
4,715,963 + +1.0
4,715,964 - +0.3
4,715,964 - +0.0
4,716,068 + AO353_21540 0.20 +0.7
4,716,068 + AO353_21540 0.20 -0.1
4,716,069 - AO353_21540 0.20 -0.9
4,716,088 + AO353_21540 0.24 -2.3
4,716,246 + AO353_21540 0.60 -0.7
4,716,247 - AO353_21540 0.60 -0.8
4,716,253 + AO353_21540 0.61 -0.6
4,716,502 + AO353_21545 0.12 +0.5
4,716,502 + AO353_21545 0.12 +0.7
4,716,503 - AO353_21545 0.13 -0.8
4,716,503 - AO353_21545 0.13 -0.5
4,716,584 - AO353_21545 0.29 +1.1
4,716,630 + AO353_21545 0.38 -1.1
4,716,630 + AO353_21545 0.38 -0.9
4,716,631 - AO353_21545 0.38 -1.0
4,716,799 + AO353_21545 0.72 +0.3
4,716,799 + AO353_21545 0.72 -0.7
4,716,800 - AO353_21545 0.72 -0.5
4,716,800 - AO353_21545 0.72 -0.0
4,716,852 + AO353_21545 0.82 +0.8
4,716,853 - AO353_21545 0.82 +0.5
4,716,853 - AO353_21545 0.82 -0.2
4,716,969 + -0.6
4,716,969 + -0.5
4,716,973 + +0.6
4,716,974 - -0.1
4,716,974 - -0.8
4,716,974 - -0.3
4,717,214 + AO353_21550 0.13 -0.2
4,717,215 - AO353_21550 0.13 +0.1
4,717,238 + AO353_21550 0.15 -0.3
4,717,239 - AO353_21550 0.15 +0.4
4,717,239 - AO353_21550 0.15 -0.1
4,717,239 - AO353_21550 0.15 -1.0
4,717,239 - AO353_21550 0.15 +0.1
4,717,301 + AO353_21550 0.19 -0.2
4,717,301 + AO353_21550 0.19 +0.3
4,717,302 - AO353_21550 0.19 -0.2
4,717,302 - AO353_21550 0.19 +1.3
4,717,331 + AO353_21550 0.21 +0.1
4,717,331 + AO353_21550 0.21 +0.7
4,717,332 - AO353_21550 0.21 +0.3
4,717,332 - AO353_21550 0.21 +0.7
4,717,332 - AO353_21550 0.21 +0.1
4,717,383 - AO353_21550 0.25 +0.2

Or see this region's nucleotide sequence