Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21535 and AO353_21540 overlap by 17 nucleotides AO353_21540 and AO353_21545 are separated by 15 nucleotides AO353_21545 and AO353_21550 are separated by 74 nucleotides
AO353_21535: AO353_21535 - type VI secretion system protein ImpG, at 4,714,207 to 4,715,997
_21535
AO353_21540: AO353_21540 - type VI secretion protein, at 4,715,981 to 4,716,424
_21540
AO353_21545: AO353_21545 - type VI secretion effector protein (Hcp), at 4,716,440 to 4,716,940
_21545
AO353_21550: AO353_21550 - EvpB family type VI secretion protein, at 4,717,015 to 4,718,502
_21550
Position (kb)
4715
4716
4717 Strain fitness (log2 ratio)
-2
-1
0
1 at 4715.104 kb on + strand, within AO353_21535 at 4715.104 kb on + strand, within AO353_21535 at 4715.104 kb on + strand, within AO353_21535 at 4715.104 kb on + strand, within AO353_21535 at 4715.105 kb on - strand, within AO353_21535 at 4715.105 kb on - strand, within AO353_21535 at 4715.105 kb on - strand, within AO353_21535 at 4715.144 kb on + strand, within AO353_21535 at 4715.144 kb on + strand, within AO353_21535 at 4715.144 kb on + strand, within AO353_21535 at 4715.144 kb on + strand, within AO353_21535 at 4715.144 kb on + strand, within AO353_21535 at 4715.144 kb on + strand, within AO353_21535 at 4715.145 kb on - strand, within AO353_21535 at 4715.145 kb on - strand, within AO353_21535 at 4715.145 kb on - strand, within AO353_21535 at 4715.145 kb on - strand, within AO353_21535 at 4715.145 kb on - strand, within AO353_21535 at 4715.150 kb on + strand, within AO353_21535 at 4715.150 kb on + strand, within AO353_21535 at 4715.151 kb on - strand, within AO353_21535 at 4715.151 kb on - strand, within AO353_21535 at 4715.225 kb on + strand, within AO353_21535 at 4715.225 kb on + strand, within AO353_21535 at 4715.226 kb on - strand, within AO353_21535 at 4715.387 kb on + strand, within AO353_21535 at 4715.598 kb on + strand, within AO353_21535 at 4715.599 kb on - strand, within AO353_21535 at 4715.747 kb on + strand, within AO353_21535 at 4715.783 kb on + strand, within AO353_21535 at 4715.783 kb on + strand, within AO353_21535 at 4715.784 kb on - strand, within AO353_21535 at 4715.960 kb on + strand at 4715.960 kb on + strand at 4715.961 kb on - strand at 4715.963 kb on + strand at 4715.963 kb on + strand at 4715.964 kb on - strand at 4715.964 kb on - strand at 4716.068 kb on + strand, within AO353_21540 at 4716.068 kb on + strand, within AO353_21540 at 4716.069 kb on - strand, within AO353_21540 at 4716.088 kb on + strand, within AO353_21540 at 4716.246 kb on + strand, within AO353_21540 at 4716.247 kb on - strand, within AO353_21540 at 4716.253 kb on + strand, within AO353_21540 at 4716.502 kb on + strand, within AO353_21545 at 4716.502 kb on + strand, within AO353_21545 at 4716.503 kb on - strand, within AO353_21545 at 4716.503 kb on - strand, within AO353_21545 at 4716.584 kb on - strand, within AO353_21545 at 4716.630 kb on + strand, within AO353_21545 at 4716.630 kb on + strand, within AO353_21545 at 4716.631 kb on - strand, within AO353_21545 at 4716.799 kb on + strand, within AO353_21545 at 4716.799 kb on + strand, within AO353_21545 at 4716.800 kb on - strand, within AO353_21545 at 4716.800 kb on - strand, within AO353_21545 at 4716.852 kb on + strand, within AO353_21545 at 4716.853 kb on - strand, within AO353_21545 at 4716.853 kb on - strand, within AO353_21545 at 4716.969 kb on + strand at 4716.969 kb on + strand at 4716.973 kb on + strand at 4716.974 kb on - strand at 4716.974 kb on - strand at 4716.974 kb on - strand at 4717.214 kb on + strand, within AO353_21550 at 4717.215 kb on - strand, within AO353_21550 at 4717.238 kb on + strand, within AO353_21550 at 4717.239 kb on - strand, within AO353_21550 at 4717.239 kb on - strand, within AO353_21550 at 4717.239 kb on - strand, within AO353_21550 at 4717.239 kb on - strand, within AO353_21550 at 4717.301 kb on + strand, within AO353_21550 at 4717.301 kb on + strand, within AO353_21550 at 4717.302 kb on - strand, within AO353_21550 at 4717.302 kb on - strand, within AO353_21550 at 4717.331 kb on + strand, within AO353_21550 at 4717.331 kb on + strand, within AO353_21550 at 4717.332 kb on - strand, within AO353_21550 at 4717.332 kb on - strand, within AO353_21550 at 4717.332 kb on - strand, within AO353_21550 at 4717.383 kb on - strand, within AO353_21550
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 4,715,104 + AO353_21535 0.50 +0.0 4,715,104 + AO353_21535 0.50 +0.7 4,715,104 + AO353_21535 0.50 -0.4 4,715,104 + AO353_21535 0.50 -1.3 4,715,105 - AO353_21535 0.50 +0.1 4,715,105 - AO353_21535 0.50 -1.1 4,715,105 - AO353_21535 0.50 +0.0 4,715,144 + AO353_21535 0.52 +0.9 4,715,144 + AO353_21535 0.52 -0.9 4,715,144 + AO353_21535 0.52 +1.1 4,715,144 + AO353_21535 0.52 +0.5 4,715,144 + AO353_21535 0.52 -0.6 4,715,144 + AO353_21535 0.52 -0.1 4,715,145 - AO353_21535 0.52 +0.1 4,715,145 - AO353_21535 0.52 +0.2 4,715,145 - AO353_21535 0.52 +0.1 4,715,145 - AO353_21535 0.52 -0.1 4,715,145 - AO353_21535 0.52 -0.2 4,715,150 + AO353_21535 0.53 +0.3 4,715,150 + AO353_21535 0.53 +0.4 4,715,151 - AO353_21535 0.53 -0.2 4,715,151 - AO353_21535 0.53 +1.0 4,715,225 + AO353_21535 0.57 -1.8 4,715,225 + AO353_21535 0.57 +0.1 4,715,226 - AO353_21535 0.57 +0.6 4,715,387 + AO353_21535 0.66 +0.1 4,715,598 + AO353_21535 0.78 +0.3 4,715,599 - AO353_21535 0.78 -0.3 4,715,747 + AO353_21535 0.86 +1.0 4,715,783 + AO353_21535 0.88 +0.4 4,715,783 + AO353_21535 0.88 -0.4 4,715,784 - AO353_21535 0.88 -0.5 4,715,960 + -0.4 4,715,960 + -1.4 4,715,961 - +0.2 4,715,963 + +0.4 4,715,963 + +1.0 4,715,964 - +0.3 4,715,964 - +0.0 4,716,068 + AO353_21540 0.20 +0.7 4,716,068 + AO353_21540 0.20 -0.1 4,716,069 - AO353_21540 0.20 -0.9 4,716,088 + AO353_21540 0.24 -2.3 4,716,246 + AO353_21540 0.60 -0.7 4,716,247 - AO353_21540 0.60 -0.8 4,716,253 + AO353_21540 0.61 -0.6 4,716,502 + AO353_21545 0.12 +0.5 4,716,502 + AO353_21545 0.12 +0.7 4,716,503 - AO353_21545 0.13 -0.8 4,716,503 - AO353_21545 0.13 -0.5 4,716,584 - AO353_21545 0.29 +1.1 4,716,630 + AO353_21545 0.38 -1.1 4,716,630 + AO353_21545 0.38 -0.9 4,716,631 - AO353_21545 0.38 -1.0 4,716,799 + AO353_21545 0.72 +0.3 4,716,799 + AO353_21545 0.72 -0.7 4,716,800 - AO353_21545 0.72 -0.5 4,716,800 - AO353_21545 0.72 -0.0 4,716,852 + AO353_21545 0.82 +0.8 4,716,853 - AO353_21545 0.82 +0.5 4,716,853 - AO353_21545 0.82 -0.2 4,716,969 + -0.6 4,716,969 + -0.5 4,716,973 + +0.6 4,716,974 - -0.1 4,716,974 - -0.8 4,716,974 - -0.3 4,717,214 + AO353_21550 0.13 -0.2 4,717,215 - AO353_21550 0.13 +0.1 4,717,238 + AO353_21550 0.15 -0.3 4,717,239 - AO353_21550 0.15 +0.4 4,717,239 - AO353_21550 0.15 -0.1 4,717,239 - AO353_21550 0.15 -1.0 4,717,239 - AO353_21550 0.15 +0.1 4,717,301 + AO353_21550 0.19 -0.2 4,717,301 + AO353_21550 0.19 +0.3 4,717,302 - AO353_21550 0.19 -0.2 4,717,302 - AO353_21550 0.19 +1.3 4,717,331 + AO353_21550 0.21 +0.1 4,717,331 + AO353_21550 0.21 +0.7 4,717,332 - AO353_21550 0.21 +0.3 4,717,332 - AO353_21550 0.21 +0.7 4,717,332 - AO353_21550 0.21 +0.1 4,717,383 - AO353_21550 0.25 +0.2
Or see this region's nucleotide sequence