Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_03425

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_03420 and AO353_03425 are separated by 224 nucleotidesAO353_03425 and AO353_03430 are separated by 24 nucleotidesAO353_03430 and AO353_03435 are separated by 75 nucleotides AO353_03420: AO353_03420 - phosphogluconate dehydratase, at 728,801 to 730,627 _03420 AO353_03425: AO353_03425 - glyceraldehyde-3-phosphate dehydrogenase, at 730,852 to 731,853 _03425 AO353_03430: AO353_03430 - methylglyoxal synthase, at 731,878 to 732,342 _03430 AO353_03435: AO353_03435 - RNA polymerase subunit sigma-24, at 732,418 to 732,936 _03435 Position (kb) 730 731 732Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 729.957 kb on + strand, within AO353_03420at 729.958 kb on - strand, within AO353_03420at 729.964 kb on + strand, within AO353_03420at 729.964 kb on + strand, within AO353_03420at 729.964 kb on + strand, within AO353_03420at 729.964 kb on + strand, within AO353_03420at 729.965 kb on - strand, within AO353_03420at 729.985 kb on - strand, within AO353_03420at 730.039 kb on - strand, within AO353_03420at 730.405 kb on + strand, within AO353_03420at 730.405 kb on + strand, within AO353_03420at 730.405 kb on + strand, within AO353_03420at 730.406 kb on - strand, within AO353_03420at 730.406 kb on - strand, within AO353_03420at 730.406 kb on - strand, within AO353_03420at 730.408 kb on - strand, within AO353_03420at 730.408 kb on - strand, within AO353_03420at 730.561 kb on - strandat 730.631 kb on + strandat 730.631 kb on + strandat 730.631 kb on + strandat 730.631 kb on + strandat 730.632 kb on - strandat 730.632 kb on - strandat 730.632 kb on - strandat 730.632 kb on - strandat 730.671 kb on + strandat 730.672 kb on - strandat 730.672 kb on - strandat 730.758 kb on - strandat 730.851 kb on + strandat 730.851 kb on + strandat 730.852 kb on - strandat 730.852 kb on - strandat 730.860 kb on - strandat 730.860 kb on - strandat 730.915 kb on + strandat 730.915 kb on + strandat 730.915 kb on + strandat 730.915 kb on + strandat 730.915 kb on + strandat 730.915 kb on + strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.916 kb on - strandat 730.918 kb on - strandat 730.941 kb on - strandat 730.941 kb on - strandat 730.971 kb on + strand, within AO353_03425at 730.999 kb on + strand, within AO353_03425at 730.999 kb on + strand, within AO353_03425at 730.999 kb on + strand, within AO353_03425at 730.999 kb on + strand, within AO353_03425at 730.999 kb on + strand, within AO353_03425at 730.999 kb on + strand, within AO353_03425at 731.000 kb on - strand, within AO353_03425at 731.000 kb on - strand, within AO353_03425at 731.000 kb on - strand, within AO353_03425at 731.188 kb on - strand, within AO353_03425at 731.188 kb on - strand, within AO353_03425at 731.188 kb on - strand, within AO353_03425at 731.188 kb on - strand, within AO353_03425at 731.188 kb on - strand, within AO353_03425at 731.188 kb on - strand, within AO353_03425at 731.188 kb on - strand, within AO353_03425at 731.190 kb on + strand, within AO353_03425at 731.214 kb on + strand, within AO353_03425at 731.214 kb on + strand, within AO353_03425at 731.215 kb on - strand, within AO353_03425at 731.215 kb on - strandat 731.254 kb on + strand, within AO353_03425at 731.398 kb on + strand, within AO353_03425at 731.398 kb on + strand, within AO353_03425at 731.398 kb on + strand, within AO353_03425at 731.398 kb on + strand, within AO353_03425at 731.398 kb on + strand, within AO353_03425at 731.398 kb on + strand, within AO353_03425at 731.399 kb on - strand, within AO353_03425at 731.399 kb on - strand, within AO353_03425at 731.399 kb on - strand, within AO353_03425at 731.418 kb on + strand, within AO353_03425at 731.419 kb on - strand, within AO353_03425at 731.419 kb on - strand, within AO353_03425at 731.428 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.674 kb on + strand, within AO353_03425at 731.675 kb on - strand, within AO353_03425at 731.675 kb on - strand, within AO353_03425at 731.675 kb on - strand, within AO353_03425at 731.712 kb on + strand, within AO353_03425at 731.712 kb on + strand, within AO353_03425at 731.713 kb on - strand, within AO353_03425at 731.713 kb on - strand, within AO353_03425at 731.713 kb on - strand, within AO353_03425at 731.851 kb on + strandat 731.852 kb on - strandat 732.259 kb on + strand, within AO353_03430at 732.259 kb on + strand, within AO353_03430at 732.260 kb on - strand, within AO353_03430at 732.260 kb on - strand, within AO353_03430at 732.260 kb on - strand, within AO353_03430at 732.322 kb on + strandat 732.323 kb on - strandat 732.340 kb on + strandat 732.340 kb on + strandat 732.341 kb on - strandat 732.414 kb on + strandat 732.414 kb on + strandat 732.414 kb on + strandat 732.414 kb on + strandat 732.415 kb on - strandat 732.415 kb on - strandat 732.415 kb on - strandat 732.532 kb on + strand, within AO353_03435at 732.532 kb on + strand, within AO353_03435at 732.532 kb on + strand, within AO353_03435at 732.532 kb on + strand, within AO353_03435at 732.532 kb on + strandat 732.532 kb on + strand, within AO353_03435at 732.554 kb on + strand, within AO353_03435at 732.555 kb on - strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.826 kb on + strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435at 732.827 kb on - strand, within AO353_03435

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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729,957 + AO353_03420 0.63 -0.6
729,958 - AO353_03420 0.63 -2.4
729,964 + AO353_03420 0.64 -1.0
729,964 + AO353_03420 0.64 -1.3
729,964 + AO353_03420 0.64 -1.3
729,964 + AO353_03420 0.64 -1.8
729,965 - AO353_03420 0.64 -1.2
729,985 - AO353_03420 0.65 -0.6
730,039 - AO353_03420 0.68 -1.6
730,405 + AO353_03420 0.88 -0.2
730,405 + AO353_03420 0.88 -0.8
730,405 + AO353_03420 0.88 -2.4
730,406 - AO353_03420 0.88 -0.6
730,406 - AO353_03420 0.88 +0.1
730,406 - AO353_03420 0.88 -0.4
730,408 - AO353_03420 0.88 -0.8
730,408 - AO353_03420 0.88 -0.6
730,561 - -1.9
730,631 + -2.2
730,631 + -1.0
730,631 + -1.6
730,631 + -0.3
730,632 - +0.7
730,632 - +0.0
730,632 - -1.9
730,632 - -3.4
730,671 + -2.9
730,672 - -1.6
730,672 - -1.8
730,758 - -1.3
730,851 + -0.5
730,851 + -0.4
730,852 - +0.0
730,852 - -0.2
730,860 - -2.2
730,860 - +1.3
730,915 + -2.2
730,915 + +1.0
730,915 + -2.2
730,915 + -1.7
730,915 + -0.7
730,915 + -1.3
730,916 - -0.8
730,916 - -0.7
730,916 - -0.8
730,916 - -0.7
730,916 - +1.0
730,916 - -1.7
730,916 - -1.6
730,916 - -0.3
730,916 - -2.3
730,916 - -0.7
730,918 - -0.1
730,941 - -1.2
730,941 - -1.0
730,971 + AO353_03425 0.12 -2.3
730,999 + AO353_03425 0.15 +0.0
730,999 + AO353_03425 0.15 -1.8
730,999 + AO353_03425 0.15 -2.1
730,999 + AO353_03425 0.15 -3.9
730,999 + AO353_03425 0.15 -1.8
730,999 + AO353_03425 0.15 -1.6
731,000 - AO353_03425 0.15 +0.1
731,000 - AO353_03425 0.15 +0.3
731,000 - AO353_03425 0.15 -1.3
731,188 - AO353_03425 0.34 -1.3
731,188 - AO353_03425 0.34 -2.3
731,188 - AO353_03425 0.34 -0.5
731,188 - AO353_03425 0.34 -1.1
731,188 - AO353_03425 0.34 -0.6
731,188 - AO353_03425 0.34 -1.4
731,188 - AO353_03425 0.34 -2.7
731,190 + AO353_03425 0.34 -0.4
731,214 + AO353_03425 0.36 -2.2
731,214 + AO353_03425 0.36 -1.2
731,215 - AO353_03425 0.36 -0.1
731,215 - -0.6
731,254 + AO353_03425 0.40 -0.8
731,398 + AO353_03425 0.54 -0.3
731,398 + AO353_03425 0.54 -1.5
731,398 + AO353_03425 0.54 -1.5
731,398 + AO353_03425 0.54 -0.2
731,398 + AO353_03425 0.54 -1.6
731,398 + AO353_03425 0.54 -2.4
731,399 - AO353_03425 0.55 -2.0
731,399 - AO353_03425 0.55 +0.0
731,399 - AO353_03425 0.55 -1.7
731,418 + AO353_03425 0.56 -0.8
731,419 - AO353_03425 0.57 -1.7
731,419 - AO353_03425 0.57 -0.6
731,428 + AO353_03425 0.57 -0.6
731,674 + AO353_03425 0.82 -1.0
731,674 + AO353_03425 0.82 -1.0
731,674 + AO353_03425 0.82 -1.6
731,674 + AO353_03425 0.82 -1.2
731,674 + AO353_03425 0.82 +0.6
731,674 + AO353_03425 0.82 -1.3
731,674 + AO353_03425 0.82 -1.9
731,674 + AO353_03425 0.82 -0.2
731,674 + AO353_03425 0.82 -0.6
731,674 + AO353_03425 0.82 -1.2
731,674 + AO353_03425 0.82 -1.3
731,675 - AO353_03425 0.82 -0.6
731,675 - AO353_03425 0.82 -3.2
731,675 - AO353_03425 0.82 -0.3
731,712 + AO353_03425 0.86 +0.0
731,712 + AO353_03425 0.86 -2.2
731,713 - AO353_03425 0.86 -0.2
731,713 - AO353_03425 0.86 -1.2
731,713 - AO353_03425 0.86 -1.0
731,851 + -1.7
731,852 - -1.0
732,259 + AO353_03430 0.82 -2.6
732,259 + AO353_03430 0.82 -1.7
732,260 - AO353_03430 0.82 +0.7
732,260 - AO353_03430 0.82 +0.4
732,260 - AO353_03430 0.82 -1.1
732,322 + -2.4
732,323 - -0.6
732,340 + +0.3
732,340 + -0.1
732,341 - +0.0
732,414 + -0.2
732,414 + +0.1
732,414 + -0.3
732,414 + -0.7
732,415 - -1.7
732,415 - +0.1
732,415 - -0.2
732,532 + AO353_03435 0.22 +0.3
732,532 + AO353_03435 0.22 +0.8
732,532 + AO353_03435 0.22 +0.8
732,532 + AO353_03435 0.22 +0.1
732,532 + +0.4
732,532 + AO353_03435 0.22 +0.4
732,554 + AO353_03435 0.26 +0.9
732,555 - AO353_03435 0.26 -0.8
732,826 + AO353_03435 0.79 -0.8
732,826 + AO353_03435 0.79 +1.7
732,826 + AO353_03435 0.79 -0.6
732,826 + AO353_03435 0.79 -0.4
732,826 + AO353_03435 0.79 +0.4
732,826 + AO353_03435 0.79 -0.5
732,826 + AO353_03435 0.79 +0.4
732,826 + AO353_03435 0.79 +0.8
732,827 - AO353_03435 0.79 +0.4
732,827 - AO353_03435 0.79 -0.8
732,827 - AO353_03435 0.79 +0.8
732,827 - AO353_03435 0.79 -0.3
732,827 - AO353_03435 0.79 +0.4

Or see this region's nucleotide sequence