Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17440 and RALBFv3_RS17445 are separated by 116 nucleotides RALBFv3_RS17445 and RALBFv3_RS17450 are separated by 144 nucleotides RALBFv3_RS17450 and RALBFv3_RS17455 are separated by 77 nucleotides
RALBFv3_RS17440: RALBFv3_RS17440 - porin, at 405,936 to 406,979
_RS17440
RALBFv3_RS17445: RALBFv3_RS17445 - shikimate dehydrogenase, at 407,096 to 408,049
_RS17445
RALBFv3_RS17450: RALBFv3_RS17450 - type II 3-dehydroquinate dehydratase, at 408,194 to 408,658
_RS17450
RALBFv3_RS17455: RALBFv3_RS17455 - MFS transporter, at 408,736 to 410,061
_RS17455
Position (kb) 407
408
409 Strain fitness (log2 ratio) -2
-1
0
1
2 at 406.213 kb on + strand, within RALBFv3_RS17440 at 406.214 kb on - strand, within RALBFv3_RS17440 at 406.271 kb on - strand, within RALBFv3_RS17440 at 406.294 kb on + strand, within RALBFv3_RS17440 at 406.414 kb on + strand, within RALBFv3_RS17440 at 406.414 kb on + strand, within RALBFv3_RS17440 at 406.414 kb on + strand, within RALBFv3_RS17440 at 406.415 kb on - strand, within RALBFv3_RS17440 at 406.415 kb on - strand, within RALBFv3_RS17440 at 406.510 kb on + strand, within RALBFv3_RS17440 at 406.510 kb on + strand, within RALBFv3_RS17440 at 406.510 kb on + strand, within RALBFv3_RS17440 at 406.510 kb on + strand, within RALBFv3_RS17440 at 406.510 kb on + strand, within RALBFv3_RS17440 at 406.511 kb on - strand, within RALBFv3_RS17440 at 406.516 kb on + strand, within RALBFv3_RS17440 at 406.516 kb on + strand, within RALBFv3_RS17440 at 406.516 kb on + strand, within RALBFv3_RS17440 at 406.565 kb on - strand, within RALBFv3_RS17440 at 406.565 kb on - strand, within RALBFv3_RS17440 at 406.603 kb on + strand, within RALBFv3_RS17440 at 406.604 kb on - strand, within RALBFv3_RS17440 at 406.633 kb on + strand, within RALBFv3_RS17440 at 406.634 kb on - strand, within RALBFv3_RS17440 at 406.634 kb on - strand, within RALBFv3_RS17440 at 406.877 kb on - strand at 406.903 kb on + strand at 406.904 kb on - strand at 407.206 kb on + strand, within RALBFv3_RS17445 at 407.207 kb on + strand, within RALBFv3_RS17445 at 407.208 kb on - strand, within RALBFv3_RS17445 at 407.208 kb on - strand, within RALBFv3_RS17445 at 407.208 kb on - strand, within RALBFv3_RS17445 at 407.213 kb on + strand, within RALBFv3_RS17445 at 407.214 kb on - strand, within RALBFv3_RS17445 at 407.342 kb on + strand, within RALBFv3_RS17445 at 407.342 kb on + strand, within RALBFv3_RS17445 at 407.343 kb on - strand, within RALBFv3_RS17445 at 407.786 kb on + strand, within RALBFv3_RS17445 at 407.786 kb on + strand, within RALBFv3_RS17445 at 408.211 kb on - strand at 408.448 kb on + strand, within RALBFv3_RS17450 at 408.448 kb on + strand, within RALBFv3_RS17450 at 408.448 kb on + strand, within RALBFv3_RS17450 at 408.448 kb on + strand, within RALBFv3_RS17450 at 408.448 kb on + strand, within RALBFv3_RS17450 at 408.449 kb on - strand, within RALBFv3_RS17450 at 408.449 kb on - strand, within RALBFv3_RS17450 at 408.449 kb on - strand, within RALBFv3_RS17450 at 408.449 kb on - strand, within RALBFv3_RS17450 at 408.449 kb on - strand, within RALBFv3_RS17450 at 408.449 kb on - strand, within RALBFv3_RS17450 at 408.449 kb on - strand, within RALBFv3_RS17450 at 408.449 kb on - strand, within RALBFv3_RS17450 at 408.449 kb on - strand, within RALBFv3_RS17450 at 408.503 kb on + strand, within RALBFv3_RS17450 at 408.504 kb on - strand, within RALBFv3_RS17450 at 408.681 kb on - strand at 408.681 kb on - strand at 408.871 kb on + strand, within RALBFv3_RS17455 at 408.871 kb on + strand, within RALBFv3_RS17455 at 408.871 kb on + strand, within RALBFv3_RS17455 at 408.872 kb on - strand, within RALBFv3_RS17455 at 408.943 kb on + strand, within RALBFv3_RS17455
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 406,213 + RALBFv3_RS17440 0.27 -0.4 406,214 - RALBFv3_RS17440 0.27 +0.2 406,271 - RALBFv3_RS17440 0.32 -1.6 406,294 + RALBFv3_RS17440 0.34 -0.5 406,414 + RALBFv3_RS17440 0.46 -0.4 406,414 + RALBFv3_RS17440 0.46 +1.0 406,414 + RALBFv3_RS17440 0.46 -0.7 406,415 - RALBFv3_RS17440 0.46 +1.9 406,415 - RALBFv3_RS17440 0.46 +0.3 406,510 + RALBFv3_RS17440 0.55 +0.1 406,510 + RALBFv3_RS17440 0.55 -0.4 406,510 + RALBFv3_RS17440 0.55 -1.7 406,510 + RALBFv3_RS17440 0.55 +2.4 406,510 + RALBFv3_RS17440 0.55 -0.9 406,511 - RALBFv3_RS17440 0.55 +2.5 406,516 + RALBFv3_RS17440 0.56 -0.6 406,516 + RALBFv3_RS17440 0.56 -0.8 406,516 + RALBFv3_RS17440 0.56 +1.3 406,565 - RALBFv3_RS17440 0.60 +1.2 406,565 - RALBFv3_RS17440 0.60 +0.1 406,603 + RALBFv3_RS17440 0.64 -0.3 406,604 - RALBFv3_RS17440 0.64 -0.5 406,633 + RALBFv3_RS17440 0.67 -0.8 406,634 - RALBFv3_RS17440 0.67 -0.6 406,634 - RALBFv3_RS17440 0.67 -0.5 406,877 - +1.2 406,903 + -1.2 406,904 - -1.2 407,206 + RALBFv3_RS17445 0.12 +1.0 407,207 + RALBFv3_RS17445 0.12 -0.7 407,208 - RALBFv3_RS17445 0.12 -0.7 407,208 - RALBFv3_RS17445 0.12 -0.5 407,208 - RALBFv3_RS17445 0.12 +0.2 407,213 + RALBFv3_RS17445 0.12 -0.3 407,214 - RALBFv3_RS17445 0.12 +0.7 407,342 + RALBFv3_RS17445 0.26 -0.3 407,342 + RALBFv3_RS17445 0.26 +1.3 407,343 - RALBFv3_RS17445 0.26 +1.3 407,786 + RALBFv3_RS17445 0.72 +2.7 407,786 + RALBFv3_RS17445 0.72 -0.7 408,211 - +0.3 408,448 + RALBFv3_RS17450 0.55 -0.4 408,448 + RALBFv3_RS17450 0.55 -0.3 408,448 + RALBFv3_RS17450 0.55 +1.1 408,448 + RALBFv3_RS17450 0.55 +1.8 408,448 + RALBFv3_RS17450 0.55 +0.7 408,449 - RALBFv3_RS17450 0.55 -0.9 408,449 - RALBFv3_RS17450 0.55 -0.4 408,449 - RALBFv3_RS17450 0.55 -0.8 408,449 - RALBFv3_RS17450 0.55 +0.7 408,449 - RALBFv3_RS17450 0.55 -0.2 408,449 - RALBFv3_RS17450 0.55 +1.1 408,449 - RALBFv3_RS17450 0.55 +0.6 408,449 - RALBFv3_RS17450 0.55 +0.5 408,449 - RALBFv3_RS17450 0.55 +0.3 408,503 + RALBFv3_RS17450 0.66 -1.5 408,504 - RALBFv3_RS17450 0.67 -2.0 408,681 - -0.2 408,681 - -0.5 408,871 + RALBFv3_RS17455 0.10 +0.7 408,871 + RALBFv3_RS17455 0.10 +0.2 408,871 + RALBFv3_RS17455 0.10 -0.9 408,872 - RALBFv3_RS17455 0.10 -0.4 408,943 + RALBFv3_RS17455 0.16 +0.9
Or see this region's nucleotide sequence