Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03500 and RALBFv3_RS03505 are separated by 142 nucleotides RALBFv3_RS03505 and RALBFv3_RS03510 are separated by 15 nucleotides RALBFv3_RS03510 and RALBFv3_RS03515 overlap by 4 nucleotides RALBFv3_RS03515 and RALBFv3_RS03520 are separated by 10 nucleotides
RALBFv3_RS03500: RALBFv3_RS03500 - cysteine hydrolase, at 770,151 to 770,750
_RS03500
RALBFv3_RS03505: RALBFv3_RS03505 - DUF1232 domain-containing protein, at 770,893 to 771,189
_RS03505
RALBFv3_RS03510: RALBFv3_RS03510 - quinone oxidoreductase, at 771,205 to 772,179
_RS03510
RALBFv3_RS03515: RALBFv3_RS03515 - methylglyoxal synthase, at 772,176 to 772,610
_RS03515
RALBFv3_RS03520: RALBFv3_RS03520 - 3-oxoacyl-ACP reductase, at 772,621 to 773,412
_RS03520
Position (kb) 771
772
773 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 770.279 kb on - strand, within RALBFv3_RS03500 at 770.305 kb on + strand, within RALBFv3_RS03500 at 770.320 kb on + strand, within RALBFv3_RS03500 at 770.321 kb on - strand, within RALBFv3_RS03500 at 770.511 kb on - strand, within RALBFv3_RS03500 at 770.611 kb on - strand, within RALBFv3_RS03500 at 770.749 kb on - strand at 770.835 kb on - strand at 770.900 kb on + strand at 771.206 kb on + strand at 771.377 kb on + strand, within RALBFv3_RS03510 at 771.377 kb on + strand, within RALBFv3_RS03510 at 771.378 kb on - strand, within RALBFv3_RS03510 at 771.378 kb on - strand, within RALBFv3_RS03510 at 771.378 kb on - strand, within RALBFv3_RS03510 at 771.470 kb on + strand, within RALBFv3_RS03510 at 771.470 kb on + strand, within RALBFv3_RS03510 at 771.542 kb on + strand, within RALBFv3_RS03510 at 771.543 kb on - strand, within RALBFv3_RS03510 at 771.608 kb on + strand, within RALBFv3_RS03510 at 771.609 kb on - strand, within RALBFv3_RS03510 at 771.776 kb on + strand, within RALBFv3_RS03510 at 771.794 kb on + strand, within RALBFv3_RS03510 at 771.795 kb on - strand, within RALBFv3_RS03510 at 771.795 kb on - strand, within RALBFv3_RS03510 at 771.871 kb on - strand, within RALBFv3_RS03510 at 771.871 kb on - strand, within RALBFv3_RS03510 at 771.900 kb on - strand, within RALBFv3_RS03510 at 771.900 kb on - strand, within RALBFv3_RS03510 at 771.900 kb on - strand, within RALBFv3_RS03510 at 771.924 kb on - strand, within RALBFv3_RS03510 at 772.043 kb on + strand, within RALBFv3_RS03510 at 772.044 kb on - strand, within RALBFv3_RS03510 at 772.044 kb on - strand, within RALBFv3_RS03510 at 772.054 kb on - strand, within RALBFv3_RS03510 at 772.055 kb on + strand, within RALBFv3_RS03510 at 772.055 kb on + strand, within RALBFv3_RS03510 at 772.055 kb on + strand, within RALBFv3_RS03510 at 772.055 kb on + strand, within RALBFv3_RS03510 at 772.056 kb on - strand, within RALBFv3_RS03510 at 772.056 kb on - strand, within RALBFv3_RS03510 at 772.056 kb on - strand, within RALBFv3_RS03510 at 772.162 kb on - strand at 772.676 kb on + strand at 772.772 kb on + strand, within RALBFv3_RS03520 at 772.772 kb on + strand, within RALBFv3_RS03520 at 772.772 kb on + strand, within RALBFv3_RS03520 at 772.989 kb on + strand, within RALBFv3_RS03520 at 772.990 kb on - strand, within RALBFv3_RS03520 at 773.040 kb on + strand, within RALBFv3_RS03520
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 770,279 - RALBFv3_RS03500 0.21 +1.1 770,305 + RALBFv3_RS03500 0.26 -0.9 770,320 + RALBFv3_RS03500 0.28 -0.9 770,321 - RALBFv3_RS03500 0.28 +0.9 770,511 - RALBFv3_RS03500 0.60 -1.3 770,611 - RALBFv3_RS03500 0.77 -1.2 770,749 - -2.0 770,835 - +2.2 770,900 + +1.0 771,206 + -1.1 771,377 + RALBFv3_RS03510 0.18 +0.5 771,377 + RALBFv3_RS03510 0.18 +0.4 771,378 - RALBFv3_RS03510 0.18 -0.5 771,378 - RALBFv3_RS03510 0.18 -0.8 771,378 - RALBFv3_RS03510 0.18 -0.3 771,470 + RALBFv3_RS03510 0.27 +0.7 771,470 + RALBFv3_RS03510 0.27 -1.0 771,542 + RALBFv3_RS03510 0.35 -0.5 771,543 - RALBFv3_RS03510 0.35 -0.7 771,608 + RALBFv3_RS03510 0.41 -0.9 771,609 - RALBFv3_RS03510 0.41 +1.5 771,776 + RALBFv3_RS03510 0.59 -0.1 771,794 + RALBFv3_RS03510 0.60 +4.6 771,795 - RALBFv3_RS03510 0.61 +0.3 771,795 - RALBFv3_RS03510 0.61 -1.7 771,871 - RALBFv3_RS03510 0.68 -0.6 771,871 - RALBFv3_RS03510 0.68 -0.2 771,900 - RALBFv3_RS03510 0.71 +1.2 771,900 - RALBFv3_RS03510 0.71 +0.7 771,900 - RALBFv3_RS03510 0.71 -0.7 771,924 - RALBFv3_RS03510 0.74 +1.6 772,043 + RALBFv3_RS03510 0.86 -0.7 772,044 - RALBFv3_RS03510 0.86 -0.7 772,044 - RALBFv3_RS03510 0.86 -0.7 772,054 - RALBFv3_RS03510 0.87 -0.3 772,055 + RALBFv3_RS03510 0.87 -0.4 772,055 + RALBFv3_RS03510 0.87 -1.0 772,055 + RALBFv3_RS03510 0.87 +1.0 772,055 + RALBFv3_RS03510 0.87 +1.1 772,056 - RALBFv3_RS03510 0.87 -0.9 772,056 - RALBFv3_RS03510 0.87 -1.3 772,056 - RALBFv3_RS03510 0.87 +0.4 772,162 - +0.1 772,676 + -0.1 772,772 + RALBFv3_RS03520 0.19 +2.4 772,772 + RALBFv3_RS03520 0.19 -0.5 772,772 + RALBFv3_RS03520 0.19 -0.0 772,989 + RALBFv3_RS03520 0.46 +2.1 772,990 - RALBFv3_RS03520 0.47 -0.3 773,040 + RALBFv3_RS03520 0.53 +0.6
Or see this region's nucleotide sequence