Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04225

Experiment: Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 5 generations

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04215 and MMP_RS04220 are separated by 48 nucleotidesMMP_RS04220 and MMP_RS04225 are separated by 86 nucleotidesMMP_RS04225 and MMP_RS04230 are separated by 80 nucleotides MMP_RS04215: MMP_RS04215 - nickel pincer cofactor biosynthesis protein LarB, at 801,580 to 802,365 _RS04215 MMP_RS04220: MMP_RS04220 - queuosine precursor transporter, at 802,414 to 803,022 _RS04220 MMP_RS04225: MMP_RS04225 - hypothetical protein, at 803,109 to 803,621 _RS04225 MMP_RS04230: MMP_RS04230 - hypothetical protein, at 803,702 to 805,855 _RS04230 Position (kb) 803 804Strain fitness (log2 ratio) -2 -1 0 1at 802.265 kb on - strand, within MMP_RS04215at 802.407 kb on + strandat 802.443 kb on + strandat 802.445 kb on + strandat 802.469 kb on + strandat 802.474 kb on + strandat 802.529 kb on + strand, within MMP_RS04220at 802.587 kb on - strand, within MMP_RS04220at 802.628 kb on - strand, within MMP_RS04220at 802.660 kb on - strand, within MMP_RS04220at 802.661 kb on + strand, within MMP_RS04220at 802.661 kb on + strand, within MMP_RS04220at 802.661 kb on + strand, within MMP_RS04220at 802.661 kb on + strand, within MMP_RS04220at 802.680 kb on + strand, within MMP_RS04220at 802.723 kb on - strand, within MMP_RS04220at 802.748 kb on - strand, within MMP_RS04220at 802.869 kb on - strand, within MMP_RS04220at 802.879 kb on - strand, within MMP_RS04220at 802.880 kb on + strand, within MMP_RS04220at 802.883 kb on - strand, within MMP_RS04220at 802.971 kb on - strandat 802.971 kb on - strandat 802.971 kb on - strandat 802.971 kb on - strandat 802.971 kb on - strandat 802.972 kb on + strandat 802.972 kb on + strandat 803.016 kb on - strandat 803.032 kb on - strandat 803.033 kb on + strandat 803.036 kb on - strandat 803.036 kb on - strandat 803.037 kb on + strandat 803.046 kb on + strandat 803.081 kb on + strandat 803.126 kb on + strandat 803.130 kb on - strandat 803.151 kb on - strandat 803.152 kb on + strandat 803.152 kb on + strandat 803.164 kb on + strand, within MMP_RS04225at 803.186 kb on - strand, within MMP_RS04225at 803.196 kb on + strand, within MMP_RS04225at 803.264 kb on - strand, within MMP_RS04225at 803.265 kb on + strand, within MMP_RS04225at 803.359 kb on - strand, within MMP_RS04225at 803.405 kb on - strand, within MMP_RS04225at 803.405 kb on - strand, within MMP_RS04225at 803.476 kb on + strand, within MMP_RS04225at 803.477 kb on - strand, within MMP_RS04225at 803.622 kb on - strandat 803.622 kb on - strandat 803.623 kb on + strandat 803.623 kb on + strandat 803.624 kb on - strandat 803.624 kb on - strandat 803.624 kb on - strandat 803.643 kb on - strandat 803.643 kb on - strandat 803.659 kb on + strandat 803.663 kb on + strandat 803.663 kb on + strandat 803.663 kb on + strandat 803.663 kb on + strandat 803.664 kb on - strandat 803.694 kb on - strandat 803.694 kb on - strandat 803.695 kb on + strandat 803.703 kb on - strandat 803.714 kb on - strandat 803.714 kb on - strandat 803.715 kb on + strandat 803.715 kb on + strandat 803.715 kb on + strandat 803.826 kb on - strandat 803.827 kb on + strandat 803.852 kb on + strandat 803.865 kb on + strandat 803.921 kb on + strand, within MMP_RS04230at 803.921 kb on + strand, within MMP_RS04230at 803.946 kb on - strand, within MMP_RS04230at 803.946 kb on - strand, within MMP_RS04230at 803.946 kb on - strand, within MMP_RS04230at 803.947 kb on + strand, within MMP_RS04230at 804.080 kb on + strand, within MMP_RS04230at 804.157 kb on - strand, within MMP_RS04230at 804.173 kb on + strand, within MMP_RS04230at 804.198 kb on - strand, within MMP_RS04230at 804.200 kb on - strand, within MMP_RS04230at 804.249 kb on + strand, within MMP_RS04230at 804.296 kb on + strand, within MMP_RS04230at 804.298 kb on - strand, within MMP_RS04230at 804.424 kb on - strand, within MMP_RS04230at 804.424 kb on - strand, within MMP_RS04230at 804.515 kb on - strand, within MMP_RS04230at 804.548 kb on - strand, within MMP_RS04230at 804.607 kb on + strand, within MMP_RS04230at 804.607 kb on + strand, within MMP_RS04230

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Syntrophotalea carbinolica 1:1 starting OD to methanogen; Ethanol_timecourse1; 5 generations
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802,265 - MMP_RS04215 0.87 +0.0
802,407 + +0.7
802,443 + +0.3
802,445 + +0.0
802,469 + -0.2
802,474 + -0.2
802,529 + MMP_RS04220 0.19 +0.5
802,587 - MMP_RS04220 0.28 -0.2
802,628 - MMP_RS04220 0.35 +0.2
802,660 - MMP_RS04220 0.40 +1.4
802,661 + MMP_RS04220 0.41 +0.2
802,661 + MMP_RS04220 0.41 -0.2
802,661 + MMP_RS04220 0.41 -0.3
802,661 + MMP_RS04220 0.41 -0.1
802,680 + MMP_RS04220 0.44 +0.6
802,723 - MMP_RS04220 0.51 +0.5
802,748 - MMP_RS04220 0.55 +0.2
802,869 - MMP_RS04220 0.75 -0.7
802,879 - MMP_RS04220 0.76 +0.3
802,880 + MMP_RS04220 0.77 -0.2
802,883 - MMP_RS04220 0.77 +0.0
802,971 - +0.3
802,971 - -0.4
802,971 - -0.4
802,971 - -0.4
802,971 - -0.7
802,972 + +0.2
802,972 + +0.6
803,016 - -0.1
803,032 - -0.9
803,033 + +0.2
803,036 - +0.7
803,036 - -0.2
803,037 + +0.4
803,046 + -0.3
803,081 + +0.1
803,126 + -0.4
803,130 - -0.0
803,151 - -0.5
803,152 + +0.4
803,152 + +0.9
803,164 + MMP_RS04225 0.11 -0.0
803,186 - MMP_RS04225 0.15 +0.8
803,196 + MMP_RS04225 0.17 +0.3
803,264 - MMP_RS04225 0.30 +0.8
803,265 + MMP_RS04225 0.30 +0.1
803,359 - MMP_RS04225 0.49 +0.6
803,405 - MMP_RS04225 0.58 -0.5
803,405 - MMP_RS04225 0.58 +0.9
803,476 + MMP_RS04225 0.72 +0.2
803,477 - MMP_RS04225 0.72 -0.5
803,622 - -0.3
803,622 - +0.2
803,623 + -0.0
803,623 + -0.7
803,624 - +0.0
803,624 - +0.0
803,624 - +0.1
803,643 - -0.1
803,643 - +0.3
803,659 + -0.0
803,663 + -0.2
803,663 + +0.5
803,663 + -0.7
803,663 + +0.3
803,664 - -0.1
803,694 - +0.2
803,694 - +0.3
803,695 + -1.4
803,703 - +0.1
803,714 - -0.1
803,714 - -0.6
803,715 + -0.8
803,715 + -2.2
803,715 + -0.0
803,826 - -1.0
803,827 + -0.1
803,852 + -0.2
803,865 + +0.2
803,921 + MMP_RS04230 0.10 -0.9
803,921 + MMP_RS04230 0.10 +0.2
803,946 - MMP_RS04230 0.11 +1.1
803,946 - MMP_RS04230 0.11 +0.5
803,946 - MMP_RS04230 0.11 -2.0
803,947 + MMP_RS04230 0.11 +0.1
804,080 + MMP_RS04230 0.18 +0.1
804,157 - MMP_RS04230 0.21 +0.1
804,173 + MMP_RS04230 0.22 -0.3
804,198 - MMP_RS04230 0.23 +0.4
804,200 - MMP_RS04230 0.23 +0.5
804,249 + MMP_RS04230 0.25 -0.4
804,296 + MMP_RS04230 0.28 +0.1
804,298 - MMP_RS04230 0.28 +0.1
804,424 - MMP_RS04230 0.34 -0.0
804,424 - MMP_RS04230 0.34 -0.2
804,515 - MMP_RS04230 0.38 -0.7
804,548 - MMP_RS04230 0.39 -0.1
804,607 + MMP_RS04230 0.42 +0.7
804,607 + MMP_RS04230 0.42 -0.4

Or see this region's nucleotide sequence