Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS08905

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 Vitamin & Casamino Acid FREE
1,641,900	+				+0.0
1,641,950	+				-0.5
1,642,047	-		MMJJ_RS08900	0.19	-0.3
1,642,081	+		MMJJ_RS08900	0.23	+0.0
1,642,081	+		MMJJ_RS08900	0.23	+0.2
1,642,082	-		MMJJ_RS08900	0.23	-0.3
1,642,082	-		MMJJ_RS08900	0.23	-1.7
1,642,082	-		MMJJ_RS08900	0.23	+0.9
1,642,082	-		MMJJ_RS08900	0.23	-0.1
1,642,082	-		MMJJ_RS08900	0.23	+1.0
1,642,082	-		MMJJ_RS08900	0.23	-0.5
1,642,082	-		MMJJ_RS08900	0.23	+0.1
1,642,082	-		MMJJ_RS08900	0.23	+0.8
1,642,083	+		MMJJ_RS08900	0.23	+1.3
1,642,083	+		MMJJ_RS08900	0.23	-1.3
1,642,083	+		MMJJ_RS08900	0.23	-0.0
1,642,083	+		MMJJ_RS08900	0.23	+1.1
1,642,083	+		MMJJ_RS08900	0.23	+2.1
1,642,083	+		MMJJ_RS08900	0.23	+1.7
1,642,083	+		MMJJ_RS08900	0.23	-0.5
1,642,083	+		MMJJ_RS08900	0.23	-0.0
1,642,083	+		MMJJ_RS08900	0.23	+0.1
1,642,083	+		MMJJ_RS08900	0.23	+0.4
1,642,083	+		MMJJ_RS08900	0.23	-0.5
1,642,083	+		MMJJ_RS08900	0.23	-0.8
1,642,083	+		MMJJ_RS08900	0.23	-0.6
1,642,084	-		MMJJ_RS08900	0.23	+0.6
1,642,095	+		MMJJ_RS08900	0.24	-1.4
1,642,095	+		MMJJ_RS08900	0.24	-1.7
1,642,109	-		MMJJ_RS08900	0.26	+0.9
1,642,112	-		MMJJ_RS08900	0.26	-0.0
1,642,211	-		MMJJ_RS08900	0.36	+0.6
1,642,218	-		MMJJ_RS08900	0.37	-0.7
1,642,243	-		MMJJ_RS08900	0.39	+2.0
1,642,244	+		MMJJ_RS08900	0.40	-0.9
1,642,244	+		MMJJ_RS08900	0.40	-0.9
1,642,244	+		MMJJ_RS08900	0.40	+0.3
1,642,244	+		MMJJ_RS08900	0.40	-0.2
1,642,250	-		MMJJ_RS08900	0.40	-0.6
1,642,263	+		MMJJ_RS08900	0.41	+0.2
1,642,335	+		MMJJ_RS08900	0.49	-0.7
1,642,337	+		MMJJ_RS08900	0.49	+0.5
1,642,338	-		MMJJ_RS08900	0.49	-0.4
1,642,339	+		MMJJ_RS08900	0.49	+0.3
1,642,363	+		MMJJ_RS08900	0.52	+0.6
1,642,377	+		MMJJ_RS08900	0.53	+0.8
1,642,418	+		MMJJ_RS08900	0.57	+0.6
1,642,418	+		MMJJ_RS08900	0.57	+0.0
1,642,419	-		MMJJ_RS08900	0.58	+1.0
1,642,420	+		MMJJ_RS08900	0.58	-0.3
1,642,420	+		MMJJ_RS08900	0.58	-1.0
1,642,420	+		MMJJ_RS08900	0.58	-0.2
1,642,420	+		MMJJ_RS08900	0.58	+0.3
1,642,480	-		MMJJ_RS08900	0.64	+0.1
1,642,542	+		MMJJ_RS08900	0.70	+0.4
1,642,594	-		MMJJ_RS08900	0.76	+0.1
1,642,595	+		MMJJ_RS08900	0.76	-0.1
1,642,602	+		MMJJ_RS08900	0.76	-0.2
1,642,610	-		MMJJ_RS08900	0.77	+0.5
1,642,611	+		MMJJ_RS08900	0.77	+0.5
1,642,620	+		MMJJ_RS08900	0.78	-0.5
1,642,681	+		MMJJ_RS08900	0.85	-0.9
1,642,698	-		MMJJ_RS08900	0.86	-0.4
1,642,699	+		MMJJ_RS08900	0.86	-1.3
1,642,699	+		MMJJ_RS08900	0.86	-0.7
1,642,709	+		MMJJ_RS08900	0.88	-0.8
1,642,718	+		MMJJ_RS08900	0.88	+1.0
1,642,725	+		MMJJ_RS08900	0.89	+1.7
1,642,858	+				+0.9
1,642,865	-				+0.5
1,642,879	+				-0.6
1,642,954	-				-1.4
1,642,971	-				-1.3
1,642,972	+				-0.9
1,642,972	+				-3.4
1,642,972	+				-0.0
1,642,984	-				-0.7
1,643,009	-				-0.3
1,643,009	-				-1.0
1,643,010	+		MMJJ_RS08905	0.10	-2.7
1,643,010	+		MMJJ_RS08905	0.10	-0.9
1,643,010	+		MMJJ_RS08905	0.10	-1.8
1,643,010	+		MMJJ_RS08905	0.10	-2.0
1,643,024	-		MMJJ_RS08905	0.11	-2.9
1,643,029	-		MMJJ_RS08905	0.12	-2.2
1,643,066	-		MMJJ_RS08905	0.15	+0.2
1,643,066	-		MMJJ_RS08905	0.15	-1.6
1,643,067	+		MMJJ_RS08905	0.15	-1.0
1,643,068	-		MMJJ_RS08905	0.15	-1.4
1,643,069	+		MMJJ_RS08905	0.15	+1.3
1,643,069	+		MMJJ_RS08905	0.15	-1.5
1,643,069	+		MMJJ_RS08905	0.15	-1.1
1,643,075	-		MMJJ_RS08905	0.15	-2.2
1,643,113	-		MMJJ_RS08905	0.19	-1.3
1,643,122	-		MMJJ_RS08905	0.19	-2.0
1,643,131	-		MMJJ_RS08905	0.20	-0.7
1,643,132	+		MMJJ_RS08905	0.20	-3.2
1,643,152	-		MMJJ_RS08905	0.22	-0.3
1,643,164	-		MMJJ_RS08905	0.23	-1.9
1,643,164	-		MMJJ_RS08905	0.23	-2.9
1,643,324	+		MMJJ_RS08905	0.36	-1.8
1,643,408	-		MMJJ_RS08905	0.43	-1.0
1,643,409	+		MMJJ_RS08905	0.43	-2.3
1,643,414	+		MMJJ_RS08905	0.44	-3.3
1,643,416	-		MMJJ_RS08905	0.44	-2.0
1,643,486	-		MMJJ_RS08905	0.50	-0.1
1,643,496	-		MMJJ_RS08905	0.50	-1.5
1,643,496	-		MMJJ_RS08905	0.50	-1.9
1,643,687	+		MMJJ_RS08905	0.66	-2.7
1,643,687	+		MMJJ_RS08905	0.66	-1.3
1,643,687	+		MMJJ_RS08905	0.66	-2.0
1,643,719	-		MMJJ_RS08905	0.69	-2.2
1,643,750	-		MMJJ_RS08905	0.72	-1.3
1,643,750	-		MMJJ_RS08905	0.72	-2.0
1,643,751	+		MMJJ_RS08905	0.72	-3.0
1,643,792	-		MMJJ_RS08905	0.75	-2.5
1,643,898	-		MMJJ_RS08905	0.84	-1.4
1,643,898	-		MMJJ_RS08905	0.84	-2.3
1,643,898	-		MMJJ_RS08905	0.84	-1.3
1,643,898	-		MMJJ_RS08905	0.84	-0.6
1,643,899	+		MMJJ_RS08905	0.84	-2.9
1,643,899	+		MMJJ_RS08905	0.84	-0.3
1,643,966	-		MMJJ_RS08905	0.90	-2.0
1,643,966	-		MMJJ_RS08905	0.90	-1.9
1,643,966	-		MMJJ_RS08905	0.90	-2.6
1,643,967	+		MMJJ_RS08905	0.90	-0.7
1,644,008	-				-0.5
1,644,009	+				-0.8
1,644,011	-				-2.7
1,644,055	-				-2.2
1,644,055	-				-2.5
1,644,055	-				-1.0
1,644,055	-				-1.7
1,644,056	+				-1.0
1,644,056	+				-2.1
1,644,056	+				+0.6
1,644,058	+				+0.3
1,644,072	-				-1.1
1,644,072	-				-1.2
1,644,076	-				+0.7
1,644,076	-				-0.5
1,644,076	-				-0.3
1,644,077	+				-0.5
1,644,077	+				-2.9
1,644,102	-				-1.1
1,644,103	+				-0.6
1,644,125	-				+0.8
1,644,126	+				-1.7
1,644,126	+				-0.1
1,644,147	-		MMJJ_RS08910	0.11	-0.5
1,644,167	-		MMJJ_RS08910	0.17	+0.4
1,644,176	-		MMJJ_RS08910	0.20	-0.3
1,644,176	-		MMJJ_RS08910	0.20	-0.4
1,644,176	-		MMJJ_RS08910	0.20	+1.3
1,644,176	-		MMJJ_RS08910	0.20	-0.0
1,644,176	-		MMJJ_RS08910	0.20	-0.1
1,644,176	-		MMJJ_RS08910	0.20	-0.7
1,644,176	-		MMJJ_RS08910	0.20	-0.3
1,644,177	+		MMJJ_RS08910	0.21	+0.1
1,644,177	+		MMJJ_RS08910	0.21	-0.5
1,644,177	+		MMJJ_RS08910	0.21	+0.7
1,644,177	+		MMJJ_RS08910	0.21	-1.2
1,644,180	-		MMJJ_RS08910	0.22	-0.3
1,644,181	+		MMJJ_RS08910	0.22	+0.2
1,644,219	-		MMJJ_RS08910	0.34	+0.1
1,644,219	-		MMJJ_RS08910	0.34	-0.7
1,644,220	+		MMJJ_RS08910	0.35	-0.3
1,644,253	+		MMJJ_RS08910	0.45	+0.0
1,644,293	-		MMJJ_RS08910	0.58	-0.2
1,644,301	+		MMJJ_RS08910	0.61	+0.5
1,644,306	-		MMJJ_RS08910	0.63	+0.8
1,644,359	-		MMJJ_RS08910	0.80	-1.1
1,644,360	+		MMJJ_RS08910	0.80	+0.3
1,644,360	+		MMJJ_RS08910	0.80	+0.4
1,644,362	-		MMJJ_RS08910	0.81	+1.4
1,644,379	+		MMJJ_RS08910	0.87	+0.1
1,644,433	-				+0.4
1,644,434	+				-0.3
1,644,438	+				+0.9
1,644,440	-				+0.3
1,644,455	-				-0.2
1,644,456	+				-0.3
1,644,456	+				-0.6
1,644,495	+				-0.4
1,644,507	-				-0.3
1,644,511	-				-0.1
1,644,511	-				+0.2
1,644,511	-				+0.6
1,644,511	-				-0.2
1,644,511	-				-0.4
1,644,511	-				-0.3
1,644,512	+				-0.8
1,644,512	+				+0.6
1,644,513	-				-0.3
1,644,516	-				+0.4
1,644,516	-				-0.2
1,644,516	-				-1.3
1,644,516	-				+0.4
1,644,516	-				+0.7
1,644,517	+				+0.0
1,644,518	-				-0.5
1,644,518	-				-0.6
1,644,518	-				-0.0
1,644,518	-				+1.5
1,644,518	-				+0.2
1,644,519	+				+0.2
1,644,519	+				+0.3
1,644,519	+				-0.2
1,644,520	-				-0.1
1,644,520	-				+0.1
1,644,521	+				+0.0
1,644,521	+				+2.5
1,644,521	+				+0.2
1,644,670	-		MMJJ_RS08915	0.21	+0.6
1,644,723	-		MMJJ_RS08915	0.31	+0.6
1,644,723	-		MMJJ_RS08915	0.31	-0.3
1,644,724	+		MMJJ_RS08915	0.31	-0.3
1,644,781	-		MMJJ_RS08915	0.41	+1.4
1,644,906	-		MMJJ_RS08915	0.64	+0.6
1,644,906	-		MMJJ_RS08915	0.64	+0.1
1,644,907	+		MMJJ_RS08915	0.64	+0.3
1,644,907	+		MMJJ_RS08915	0.64	-0.7
1,644,907	+		MMJJ_RS08915	0.64	+0.2
1,644,907	+		MMJJ_RS08915	0.64	-0.4
1,644,908	-		MMJJ_RS08915	0.64	+0.3
1,644,908	-		MMJJ_RS08915	0.64	+0.9
1,644,909	+		MMJJ_RS08915	0.65	+0.1
1,644,916	+		MMJJ_RS08915	0.66	+0.5
1,644,916	+		MMJJ_RS08915	0.66	-0.0