Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04865

Experiment: R2A with Nickel (II) chloride 0.3125 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Nickel (II) chloride 0.3125 mM
1,031,556	+		LRK54_RS04855	0.83	-1.7
1,031,557	-		LRK54_RS04855	0.83	-1.1
1,031,583	+		LRK54_RS04855	0.87	-1.1
1,031,583	+		LRK54_RS04855	0.87	-1.8
1,031,583	+		LRK54_RS04855	0.87	-2.0
1,031,612	-				+0.9
1,031,612	-				-1.0
1,031,694	-				-0.9
1,031,694	-				+0.5
1,031,746	-				+1.6
1,031,746	-				+0.0
1,031,835	+				-0.1
1,031,835	+				-0.0
1,031,835	+				+0.9
1,031,836	-				-0.2
1,031,836	-				-1.0
1,031,836	-				+0.4
1,031,836	-				-1.0
1,031,836	-				+0.8
1,031,836	-				+1.3
1,031,836	-				-0.6
1,032,018	+		LRK54_RS04860	0.27	-0.3
1,032,018	+		LRK54_RS04860	0.27	+1.0
1,032,018	+		LRK54_RS04860	0.27	-0.8
1,032,018	+		LRK54_RS04860	0.27	+0.1
1,032,198	+		LRK54_RS04860	0.53	-0.4
1,032,198	+		LRK54_RS04860	0.53	-0.9
1,032,198	+		LRK54_RS04860	0.53	-3.2
1,032,311	-		LRK54_RS04860	0.69	-1.5
1,032,311	-		LRK54_RS04860	0.69	-1.6
1,032,339	+		LRK54_RS04860	0.73	-1.5
1,032,339	+		LRK54_RS04860	0.73	-0.5
1,032,339	+		LRK54_RS04860	0.73	+0.4
1,032,340	-		LRK54_RS04860	0.73	-1.1
1,032,340	-		LRK54_RS04860	0.73	-1.1
1,032,340	-		LRK54_RS04860	0.73	+0.6
1,032,340	-		LRK54_RS04860	0.73	+2.5
1,032,340	-		LRK54_RS04860	0.73	+1.2
1,032,340	-		LRK54_RS04860	0.73	+0.0
1,032,340	-		LRK54_RS04860	0.73	+0.7
1,032,348	+		LRK54_RS04860	0.74	-1.1
1,032,349	-		LRK54_RS04860	0.74	-1.8
1,032,349	-		LRK54_RS04860	0.74	+0.6
1,032,349	-		LRK54_RS04860	0.74	-3.3
1,032,531	+				+0.9
1,032,532	-				+2.9
1,032,535	+				-0.7
1,032,535	+				-0.4
1,032,535	+				-1.2
1,032,535	+				+0.2
1,032,535	+				-1.0
1,032,535	+				-0.7
1,032,535	+				+0.5
1,032,535	+				+0.5
1,032,535	+				-1.8
1,032,536	-				-0.0
1,032,536	-				+2.6
1,032,536	-				-0.4
1,032,536	-				+0.0
1,032,536	-				+2.6
1,032,536	-				-1.3
1,032,536	-				+0.7
1,032,536	-				+2.5
1,032,536	-				-0.7
1,032,536	-				-0.5
1,032,536	-				+1.3
1,032,536	-				-2.1
1,032,608	+				-0.4
1,032,608	+				-1.1
1,032,608	+				-0.6
1,032,608	+				-2.0
1,032,608	+				+0.4
1,032,608	+				+1.0
1,032,609	-				-0.6
1,032,609	-				-0.1
1,032,609	-				-1.6
1,032,609	-				+1.4
1,032,609	-				+0.0
1,032,675	-		LRK54_RS04865	0.17	-1.6
1,032,761	+		LRK54_RS04865	0.27	-1.9
1,032,761	+		LRK54_RS04865	0.27	-0.1
1,032,762	-		LRK54_RS04865	0.27	-0.9
1,032,762	-		LRK54_RS04865	0.27	-1.4
1,032,776	+		LRK54_RS04865	0.29	-0.9
1,032,776	+		LRK54_RS04865	0.29	-1.9
1,032,776	+		LRK54_RS04865	0.29	-0.9
1,032,776	+		LRK54_RS04865	0.29	+1.1
1,032,776	+		LRK54_RS04865	0.29	-3.4
1,032,776	+		LRK54_RS04865	0.29	-0.2
1,032,776	+		LRK54_RS04865	0.29	+0.4
1,032,776	+		LRK54_RS04865	0.29	-1.7
1,032,776	+		LRK54_RS04865	0.29	+0.9
1,032,777	-		LRK54_RS04865	0.29	+2.4
1,032,777	-		LRK54_RS04865	0.29	-0.7
1,032,777	-		LRK54_RS04865	0.29	+0.7
1,032,777	-		LRK54_RS04865	0.29	-2.5
1,032,777	-		LRK54_RS04865	0.29	+0.6
1,032,777	-		LRK54_RS04865	0.29	-1.9
1,032,777	-		LRK54_RS04865	0.29	-1.3
1,032,777	-		LRK54_RS04865	0.29	-1.1
1,032,777	-		LRK54_RS04865	0.29	+0.4
1,032,777	-		LRK54_RS04865	0.29	-1.2
1,032,777	-		LRK54_RS04865	0.29	-1.2
1,032,777	-		LRK54_RS04865	0.29	-1.6
1,032,777	-		LRK54_RS04865	0.29	-1.0
1,032,777	-		LRK54_RS04865	0.29	-1.0
1,032,777	-		LRK54_RS04865	0.29	-0.6
1,032,777	-		LRK54_RS04865	0.29	-1.2
1,032,779	+		LRK54_RS04865	0.29	+1.2
1,032,779	+		LRK54_RS04865	0.29	-1.1
1,032,779	+		LRK54_RS04865	0.29	-1.1
1,032,779	+		LRK54_RS04865	0.29	+0.9
1,032,780	-		LRK54_RS04865	0.29	+0.0
1,032,780	-		LRK54_RS04865	0.29	+0.8
1,032,780	-		LRK54_RS04865	0.29	-0.5
1,032,780	-		LRK54_RS04865	0.29	-1.0
1,032,780	-		LRK54_RS04865	0.29	-0.1
1,032,780	-		LRK54_RS04865	0.29	+1.0
1,032,780	-		LRK54_RS04865	0.29	-0.1
1,032,780	-		LRK54_RS04865	0.29	-0.7
1,032,780	-		LRK54_RS04865	0.29	-2.2
1,032,780	-		LRK54_RS04865	0.29	+1.2
1,032,780	-		LRK54_RS04865	0.29	-1.3
1,032,780	-		LRK54_RS04865	0.29	-0.2
1,032,780	-		LRK54_RS04865	0.29	-2.0
1,032,780	-		LRK54_RS04865	0.29	-1.7
1,032,780	-		LRK54_RS04865	0.29	-0.8
1,032,797	+		LRK54_RS04865	0.32	-1.4
1,032,798	-		LRK54_RS04865	0.32	-2.0
1,032,798	-		LRK54_RS04865	0.32	-0.5
1,032,798	-		LRK54_RS04865	0.32	-0.5
1,032,798	-		LRK54_RS04865	0.32	-1.8
1,032,798	-		LRK54_RS04865	0.32	+1.4
1,032,830	+		LRK54_RS04865	0.36	+0.1
1,032,831	-		LRK54_RS04865	0.36	-2.9
1,032,831	-		LRK54_RS04865	0.36	-0.7
1,032,831	-		LRK54_RS04865	0.36	-1.8
1,032,872	+		LRK54_RS04865	0.41	-2.0
1,032,872	+		LRK54_RS04865	0.41	+1.7
1,032,872	+		LRK54_RS04865	0.41	-1.3
1,032,872	+		LRK54_RS04865	0.41	+1.5
1,032,872	+		LRK54_RS04865	0.41	-1.5
1,032,872	+		LRK54_RS04865	0.41	-0.5
1,032,872	+		LRK54_RS04865	0.41	+0.3
1,032,872	+		LRK54_RS04865	0.41	-1.5
1,032,872	+		LRK54_RS04865	0.41	-2.8
1,032,872	+		LRK54_RS04865	0.41	-0.9
1,032,872	+		LRK54_RS04865	0.41	-0.1
1,032,872	+		LRK54_RS04865	0.41	-1.5
1,032,872	+		LRK54_RS04865	0.41	-1.1
1,032,872	+		LRK54_RS04865	0.41	-1.3
1,032,872	+		LRK54_RS04865	0.41	-1.2
1,032,872	+		LRK54_RS04865	0.41	-1.6
1,032,872	+		LRK54_RS04865	0.41	+0.1
1,032,872	+		LRK54_RS04865	0.41	+0.2
1,032,872	+		LRK54_RS04865	0.41	+0.2
1,032,872	+		LRK54_RS04865	0.41	+0.4
1,032,872	+		LRK54_RS04865	0.41	-1.7
1,032,873	-		LRK54_RS04865	0.41	+0.7
1,032,873	-		LRK54_RS04865	0.41	-0.4
1,032,873	-		LRK54_RS04865	0.41	-1.8
1,032,873	-		LRK54_RS04865	0.41	-0.6
1,032,873	-		LRK54_RS04865	0.41	-1.5
1,032,873	-		LRK54_RS04865	0.41	-2.4
1,032,873	-		LRK54_RS04865	0.41	-0.2
1,032,873	-		LRK54_RS04865	0.41	-0.9
1,032,873	-		LRK54_RS04865	0.41	+0.1
1,032,873	-		LRK54_RS04865	0.41	-1.1
1,032,873	-		LRK54_RS04865	0.41	+2.4
1,032,873	-		LRK54_RS04865	0.41	-0.6
1,032,873	-		LRK54_RS04865	0.41	-1.0
1,032,873	-		LRK54_RS04865	0.41	+0.4
1,032,873	-		LRK54_RS04865	0.41	-0.4
1,032,873	-		LRK54_RS04865	0.41	-1.1
1,032,873	-		LRK54_RS04865	0.41	-1.6
1,032,873	-		LRK54_RS04865	0.41	+0.2
1,032,873	-		LRK54_RS04865	0.41	-1.3
1,032,873	-		LRK54_RS04865	0.41	+0.2
1,032,873	-		LRK54_RS04865	0.41	-0.6
1,032,874	-		LRK54_RS04865	0.41	+0.4
1,032,908	+		LRK54_RS04865	0.45	-0.7
1,032,908	+		LRK54_RS04865	0.45	-0.6
1,032,909	-		LRK54_RS04865	0.45	-1.0
1,033,118	+		LRK54_RS04865	0.71	-0.2
1,033,118	+		LRK54_RS04865	0.71	-0.7
1,033,118	+		LRK54_RS04865	0.71	-0.3
1,033,118	+		LRK54_RS04865	0.71	-1.9
1,033,119	-		LRK54_RS04865	0.71	-1.5
1,033,119	-		LRK54_RS04865	0.71	-0.6
1,033,119	-		LRK54_RS04865	0.71	-0.3
1,033,119	-		LRK54_RS04865	0.71	+0.6
1,033,119	-		LRK54_RS04865	0.71	-1.9
1,033,403	-				+0.9
1,033,990	-				+0.1
1,033,990	-				-0.1
1,034,016	-				+0.2
1,034,016	-				+2.0
1,034,016	-				+1.2
1,034,016	-				-0.6
1,034,016	-				-0.1
1,034,016	-				-0.7
1,034,016	-				-1.6
1,034,016	-				+0.2
1,034,016	-				-2.1
1,034,016	-				-0.2
1,034,016	-				-2.7
1,034,016	-				-2.3
1,034,016	-				+0.1
1,034,023	-				-2.1
1,034,023	-				-1.7
1,034,023	-				+0.3
1,034,023	-				-1.3