Experiment: R2A with Zinc 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS23350 and CA265_RS23355 are separated by 72 nucleotides CA265_RS23355 and CA265_RS23360 are separated by 76 nucleotides CA265_RS23360 and CA265_RS23365 are separated by 149 nucleotides CA265_RS23365 and CA265_RS23370 are separated by 69 nucleotides
CA265_RS23350: CA265_RS23350 - TonB-dependent siderophore receptor, at 5,716,188 to 5,718,869
_RS23350
CA265_RS23355: CA265_RS23355 - hypothetical protein, at 5,718,942 to 5,719,862
_RS23355
CA265_RS23360: CA265_RS23360 - hypothetical protein, at 5,719,939 to 5,720,439
_RS23360
CA265_RS23365: CA265_RS23365 - tRNA-Glu, at 5,720,589 to 5,720,663
_RS23365
CA265_RS23370: CA265_RS23370 - tRNA-Met, at 5,720,733 to 5,720,808
_RS23370
Position (kb) 5718
5719
5720 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5718.053 kb on + strand, within CA265_RS23350 at 5718.054 kb on - strand, within CA265_RS23350 at 5718.057 kb on - strand, within CA265_RS23350 at 5718.061 kb on + strand, within CA265_RS23350 at 5718.061 kb on + strand, within CA265_RS23350 at 5718.077 kb on + strand, within CA265_RS23350 at 5718.078 kb on - strand, within CA265_RS23350 at 5718.134 kb on - strand, within CA265_RS23350 at 5718.188 kb on - strand, within CA265_RS23350 at 5718.385 kb on + strand, within CA265_RS23350 at 5718.386 kb on - strand, within CA265_RS23350 at 5718.401 kb on + strand, within CA265_RS23350 at 5718.402 kb on - strand, within CA265_RS23350 at 5718.419 kb on - strand, within CA265_RS23350 at 5718.487 kb on - strand, within CA265_RS23350 at 5718.520 kb on - strand, within CA265_RS23350 at 5718.520 kb on - strand, within CA265_RS23350 at 5718.520 kb on - strand, within CA265_RS23350 at 5718.525 kb on - strand, within CA265_RS23350 at 5718.561 kb on - strand, within CA265_RS23350 at 5718.575 kb on + strand, within CA265_RS23350 at 5718.688 kb on + strand at 5718.689 kb on - strand at 5718.765 kb on + strand at 5718.766 kb on - strand at 5718.890 kb on - strand at 5718.895 kb on + strand at 5719.026 kb on - strand at 5719.086 kb on - strand, within CA265_RS23355 at 5719.128 kb on - strand, within CA265_RS23355 at 5719.133 kb on + strand, within CA265_RS23355 at 5719.134 kb on - strand, within CA265_RS23355 at 5719.193 kb on + strand, within CA265_RS23355 at 5719.194 kb on - strand, within CA265_RS23355 at 5719.200 kb on + strand, within CA265_RS23355 at 5719.201 kb on - strand, within CA265_RS23355 at 5719.344 kb on - strand, within CA265_RS23355 at 5719.387 kb on - strand, within CA265_RS23355 at 5719.410 kb on - strand, within CA265_RS23355 at 5719.450 kb on - strand, within CA265_RS23355 at 5719.565 kb on + strand, within CA265_RS23355 at 5719.569 kb on + strand, within CA265_RS23355 at 5719.632 kb on - strand, within CA265_RS23355 at 5719.634 kb on + strand, within CA265_RS23355 at 5719.651 kb on + strand, within CA265_RS23355 at 5719.652 kb on - strand, within CA265_RS23355 at 5719.783 kb on - strand at 5719.823 kb on + strand at 5719.828 kb on + strand at 5719.862 kb on + strand at 5719.866 kb on + strand at 5719.866 kb on + strand at 5719.867 kb on - strand at 5719.868 kb on + strand at 5719.869 kb on - strand at 5719.872 kb on + strand at 5719.940 kb on + strand at 5719.972 kb on - strand at 5719.986 kb on + strand at 5720.011 kb on + strand, within CA265_RS23360 at 5720.012 kb on - strand, within CA265_RS23360 at 5720.038 kb on - strand, within CA265_RS23360 at 5720.079 kb on + strand, within CA265_RS23360 at 5720.102 kb on - strand, within CA265_RS23360 at 5720.133 kb on + strand, within CA265_RS23360 at 5720.247 kb on - strand, within CA265_RS23360 at 5720.267 kb on + strand, within CA265_RS23360 at 5720.267 kb on + strand, within CA265_RS23360 at 5720.267 kb on + strand, within CA265_RS23360 at 5720.321 kb on - strand, within CA265_RS23360 at 5720.326 kb on + strand, within CA265_RS23360 at 5720.326 kb on + strand, within CA265_RS23360 at 5720.404 kb on + strand at 5720.404 kb on + strand at 5720.404 kb on + strand at 5720.405 kb on - strand at 5720.405 kb on - strand at 5720.455 kb on - strand at 5720.466 kb on - strand at 5720.678 kb on - strand at 5720.701 kb on + strand at 5720.812 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc 0.2 mM remove 5,718,053 + CA265_RS23350 0.70 -1.5 5,718,054 - CA265_RS23350 0.70 -0.9 5,718,057 - CA265_RS23350 0.70 +1.5 5,718,061 + CA265_RS23350 0.70 +1.9 5,718,061 + CA265_RS23350 0.70 -0.6 5,718,077 + CA265_RS23350 0.70 -0.4 5,718,078 - CA265_RS23350 0.70 -1.1 5,718,134 - CA265_RS23350 0.73 -0.4 5,718,188 - CA265_RS23350 0.75 +2.1 5,718,385 + CA265_RS23350 0.82 -1.8 5,718,386 - CA265_RS23350 0.82 -1.1 5,718,401 + CA265_RS23350 0.83 -0.9 5,718,402 - CA265_RS23350 0.83 -0.1 5,718,419 - CA265_RS23350 0.83 -1.4 5,718,487 - CA265_RS23350 0.86 -0.6 5,718,520 - CA265_RS23350 0.87 -2.2 5,718,520 - CA265_RS23350 0.87 -0.6 5,718,520 - CA265_RS23350 0.87 +0.6 5,718,525 - CA265_RS23350 0.87 +1.5 5,718,561 - CA265_RS23350 0.88 +0.4 5,718,575 + CA265_RS23350 0.89 -0.5 5,718,688 + -3.2 5,718,689 - -0.7 5,718,765 + -0.1 5,718,766 - -0.4 5,718,890 - +0.0 5,718,895 + +1.4 5,719,026 - +1.4 5,719,086 - CA265_RS23355 0.16 -0.2 5,719,128 - CA265_RS23355 0.20 +4.2 5,719,133 + CA265_RS23355 0.21 -1.0 5,719,134 - CA265_RS23355 0.21 +0.9 5,719,193 + CA265_RS23355 0.27 +0.4 5,719,194 - CA265_RS23355 0.27 +3.0 5,719,200 + CA265_RS23355 0.28 +0.1 5,719,201 - CA265_RS23355 0.28 +1.9 5,719,344 - CA265_RS23355 0.44 +0.9 5,719,387 - CA265_RS23355 0.48 -1.7 5,719,410 - CA265_RS23355 0.51 -0.5 5,719,450 - CA265_RS23355 0.55 +2.1 5,719,565 + CA265_RS23355 0.68 -0.4 5,719,569 + CA265_RS23355 0.68 +0.9 5,719,632 - CA265_RS23355 0.75 -0.1 5,719,634 + CA265_RS23355 0.75 -0.1 5,719,651 + CA265_RS23355 0.77 -0.1 5,719,652 - CA265_RS23355 0.77 +0.6 5,719,783 - +1.7 5,719,823 + -2.5 5,719,828 + -0.3 5,719,862 + +1.6 5,719,866 + -1.1 5,719,866 + +1.3 5,719,867 - +0.3 5,719,868 + +0.1 5,719,869 - -0.6 5,719,872 + -0.5 5,719,940 + -1.8 5,719,972 - -0.1 5,719,986 + +0.9 5,720,011 + CA265_RS23360 0.14 +1.3 5,720,012 - CA265_RS23360 0.15 -0.9 5,720,038 - CA265_RS23360 0.20 +0.1 5,720,079 + CA265_RS23360 0.28 +0.2 5,720,102 - CA265_RS23360 0.33 -1.8 5,720,133 + CA265_RS23360 0.39 +0.2 5,720,247 - CA265_RS23360 0.61 +0.5 5,720,267 + CA265_RS23360 0.65 +1.2 5,720,267 + CA265_RS23360 0.65 -0.7 5,720,267 + CA265_RS23360 0.65 -0.3 5,720,321 - CA265_RS23360 0.76 +0.5 5,720,326 + CA265_RS23360 0.77 +0.6 5,720,326 + CA265_RS23360 0.77 +0.2 5,720,404 + -1.2 5,720,404 + +0.1 5,720,404 + +0.2 5,720,405 - +0.1 5,720,405 - -0.5 5,720,455 - -0.2 5,720,466 - -0.3 5,720,678 - -1.9 5,720,701 + -1.2 5,720,812 + +1.2
Or see this region's nucleotide sequence