Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00505

Experiment: R2A with Zinc 0.2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00500 and CA265_RS00505 are separated by 108 nucleotidesCA265_RS00505 and CA265_RS00510 are separated by 147 nucleotides CA265_RS00500: CA265_RS00500 - efflux transporter periplasmic adaptor subunit, at 110,669 to 111,841 _RS00500 CA265_RS00505: CA265_RS00505 - xylose isomerase, at 111,950 to 112,795 _RS00505 CA265_RS00510: CA265_RS00510 - 6-phosphogluconate dehydrogenase, at 112,943 to 113,791 _RS00510 Position (kb) 111 112 113Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 110.954 kb on - strand, within CA265_RS00500at 110.954 kb on - strand, within CA265_RS00500at 111.047 kb on - strand, within CA265_RS00500at 111.257 kb on + strand, within CA265_RS00500at 111.258 kb on - strand, within CA265_RS00500at 111.300 kb on + strand, within CA265_RS00500at 111.301 kb on - strand, within CA265_RS00500at 111.370 kb on + strand, within CA265_RS00500at 111.375 kb on + strand, within CA265_RS00500at 111.533 kb on - strand, within CA265_RS00500at 111.554 kb on + strand, within CA265_RS00500at 111.591 kb on + strand, within CA265_RS00500at 111.592 kb on - strand, within CA265_RS00500at 111.731 kb on - strandat 111.802 kb on + strandat 111.803 kb on - strandat 111.840 kb on - strandat 111.870 kb on + strandat 111.882 kb on + strandat 111.906 kb on + strandat 111.921 kb on - strandat 112.150 kb on - strand, within CA265_RS00505at 112.155 kb on - strand, within CA265_RS00505at 112.187 kb on - strand, within CA265_RS00505at 112.193 kb on - strand, within CA265_RS00505at 112.207 kb on + strand, within CA265_RS00505at 112.238 kb on - strand, within CA265_RS00505at 112.268 kb on + strand, within CA265_RS00505at 112.268 kb on + strand, within CA265_RS00505at 112.269 kb on - strand, within CA265_RS00505at 112.279 kb on + strand, within CA265_RS00505at 112.280 kb on - strand, within CA265_RS00505at 112.367 kb on + strand, within CA265_RS00505at 112.368 kb on - strand, within CA265_RS00505at 112.368 kb on - strand, within CA265_RS00505at 112.438 kb on - strand, within CA265_RS00505at 112.463 kb on - strand, within CA265_RS00505at 112.517 kb on - strand, within CA265_RS00505at 112.596 kb on + strand, within CA265_RS00505at 112.619 kb on - strand, within CA265_RS00505at 112.747 kb on - strandat 112.747 kb on - strandat 112.747 kb on - strandat 112.854 kb on + strandat 112.855 kb on - strandat 112.942 kb on + strandat 112.984 kb on + strandat 113.157 kb on + strand, within CA265_RS00510at 113.158 kb on - strand, within CA265_RS00510at 113.158 kb on - strand, within CA265_RS00510at 113.209 kb on + strand, within CA265_RS00510at 113.261 kb on - strand, within CA265_RS00510at 113.269 kb on + strand, within CA265_RS00510at 113.270 kb on - strand, within CA265_RS00510at 113.270 kb on - strand, within CA265_RS00510at 113.273 kb on + strand, within CA265_RS00510at 113.274 kb on - strand, within CA265_RS00510at 113.644 kb on + strand, within CA265_RS00510at 113.645 kb on - strand, within CA265_RS00510at 113.716 kb on - strandat 113.728 kb on + strandat 113.770 kb on - strandat 113.770 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Zinc 0.2 mM
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110,954 - CA265_RS00500 0.24 -2.2
110,954 - CA265_RS00500 0.24 -4.0
111,047 - CA265_RS00500 0.32 -2.2
111,257 + CA265_RS00500 0.50 -1.8
111,258 - CA265_RS00500 0.50 -1.4
111,300 + CA265_RS00500 0.54 -2.9
111,301 - CA265_RS00500 0.54 -3.2
111,370 + CA265_RS00500 0.60 -2.5
111,375 + CA265_RS00500 0.60 -2.9
111,533 - CA265_RS00500 0.74 -3.2
111,554 + CA265_RS00500 0.75 -3.2
111,591 + CA265_RS00500 0.79 -2.1
111,592 - CA265_RS00500 0.79 -1.9
111,731 - -2.4
111,802 + -1.5
111,803 - -3.5
111,840 - -1.4
111,870 + -2.2
111,882 + -1.1
111,906 + -0.5
111,921 - -4.2
112,150 - CA265_RS00505 0.24 -3.2
112,155 - CA265_RS00505 0.24 -2.8
112,187 - CA265_RS00505 0.28 -2.7
112,193 - CA265_RS00505 0.29 -3.0
112,207 + CA265_RS00505 0.30 -0.9
112,238 - CA265_RS00505 0.34 -3.1
112,268 + CA265_RS00505 0.38 -0.4
112,268 + CA265_RS00505 0.38 +0.9
112,269 - CA265_RS00505 0.38 -2.3
112,279 + CA265_RS00505 0.39 -0.7
112,280 - CA265_RS00505 0.39 -4.4
112,367 + CA265_RS00505 0.49 -0.9
112,368 - CA265_RS00505 0.49 -3.6
112,368 - CA265_RS00505 0.49 -1.4
112,438 - CA265_RS00505 0.58 -2.6
112,463 - CA265_RS00505 0.61 -1.0
112,517 - CA265_RS00505 0.67 -3.0
112,596 + CA265_RS00505 0.76 -1.0
112,619 - CA265_RS00505 0.79 -2.0
112,747 - -4.1
112,747 - -2.1
112,747 - -2.6
112,854 + -0.6
112,855 - -1.2
112,942 + -0.2
112,984 + +1.5
113,157 + CA265_RS00510 0.25 +1.2
113,158 - CA265_RS00510 0.25 -0.3
113,158 - CA265_RS00510 0.25 -1.1
113,209 + CA265_RS00510 0.31 -1.8
113,261 - CA265_RS00510 0.37 -0.7
113,269 + CA265_RS00510 0.38 +0.6
113,270 - CA265_RS00510 0.39 +0.3
113,270 - CA265_RS00510 0.39 +0.8
113,273 + CA265_RS00510 0.39 -1.4
113,274 - CA265_RS00510 0.39 -2.4
113,644 + CA265_RS00510 0.83 -0.2
113,645 - CA265_RS00510 0.83 +0.7
113,716 - -0.3
113,728 + +0.5
113,770 - -0.4
113,770 - -0.4

Or see this region's nucleotide sequence