Experiment: R2A with Zinc 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS00260 and CA265_RS00265 are separated by 62 nucleotides CA265_RS00265 and CA265_RS00270 are separated by 9 nucleotides CA265_RS00270 and CA265_RS00275 overlap by 1 nucleotides
CA265_RS00260: CA265_RS00260 - hypothetical protein, at 61,604 to 62,698
_RS00260
CA265_RS00265: CA265_RS00265 - RNA polymerase sigma-70 factor, at 62,761 to 63,426
_RS00265
CA265_RS00270: CA265_RS00270 - hypothetical protein, at 63,436 to 64,395
_RS00270
CA265_RS00275: CA265_RS00275 - hypothetical protein, at 64,395 to 66,131
_RS00275
Position (kb) 63
64
65 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 62.489 kb on + strand, within CA265_RS00260 at 62.536 kb on + strand, within CA265_RS00260 at 62.649 kb on + strand at 62.672 kb on - strand at 62.672 kb on - strand at 62.702 kb on - strand at 62.810 kb on + strand at 62.819 kb on + strand at 62.821 kb on + strand at 62.821 kb on + strand at 62.821 kb on + strand at 62.822 kb on - strand at 63.035 kb on + strand, within CA265_RS00265 at 63.043 kb on - strand, within CA265_RS00265 at 63.044 kb on + strand, within CA265_RS00265 at 63.053 kb on - strand, within CA265_RS00265 at 63.079 kb on - strand, within CA265_RS00265 at 63.204 kb on - strand, within CA265_RS00265 at 63.300 kb on - strand, within CA265_RS00265 at 63.305 kb on + strand, within CA265_RS00265 at 63.404 kb on - strand at 63.406 kb on + strand at 63.569 kb on + strand, within CA265_RS00270 at 63.720 kb on + strand, within CA265_RS00270 at 64.162 kb on + strand, within CA265_RS00270 at 64.162 kb on + strand, within CA265_RS00270 at 64.408 kb on + strand at 64.418 kb on - strand at 64.442 kb on + strand at 64.458 kb on - strand at 64.506 kb on - strand at 64.571 kb on + strand, within CA265_RS00275 at 64.689 kb on + strand, within CA265_RS00275 at 64.691 kb on + strand, within CA265_RS00275 at 64.694 kb on + strand, within CA265_RS00275 at 64.700 kb on - strand, within CA265_RS00275 at 64.761 kb on + strand, within CA265_RS00275 at 64.762 kb on - strand, within CA265_RS00275 at 64.768 kb on + strand, within CA265_RS00275 at 64.768 kb on + strand, within CA265_RS00275 at 64.776 kb on + strand, within CA265_RS00275 at 64.802 kb on + strand, within CA265_RS00275 at 64.853 kb on + strand, within CA265_RS00275 at 64.879 kb on + strand, within CA265_RS00275 at 64.964 kb on + strand, within CA265_RS00275 at 64.965 kb on - strand, within CA265_RS00275 at 64.972 kb on + strand, within CA265_RS00275 at 64.972 kb on + strand, within CA265_RS00275 at 64.972 kb on + strand, within CA265_RS00275 at 64.973 kb on - strand, within CA265_RS00275 at 65.028 kb on - strand, within CA265_RS00275 at 65.162 kb on + strand, within CA265_RS00275 at 65.211 kb on + strand, within CA265_RS00275 at 65.273 kb on + strand, within CA265_RS00275 at 65.346 kb on + strand, within CA265_RS00275 at 65.347 kb on - strand, within CA265_RS00275 at 65.347 kb on - strand, within CA265_RS00275 at 65.356 kb on + strand, within CA265_RS00275 at 65.357 kb on - strand, within CA265_RS00275 at 65.357 kb on - strand, within CA265_RS00275 at 65.367 kb on - strand, within CA265_RS00275 at 65.377 kb on + strand, within CA265_RS00275 at 65.378 kb on - strand, within CA265_RS00275
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Zinc 0.2 mM remove 62,489 + CA265_RS00260 0.81 -0.3 62,536 + CA265_RS00260 0.85 +0.3 62,649 + -0.5 62,672 - +0.3 62,672 - -0.5 62,702 - +0.4 62,810 + +2.4 62,819 + -0.7 62,821 + -1.2 62,821 + -0.5 62,821 + +0.7 62,822 - -1.8 63,035 + CA265_RS00265 0.41 -1.1 63,043 - CA265_RS00265 0.42 -1.2 63,044 + CA265_RS00265 0.42 -0.7 63,053 - CA265_RS00265 0.44 +0.5 63,079 - CA265_RS00265 0.48 -0.2 63,204 - CA265_RS00265 0.67 +0.4 63,300 - CA265_RS00265 0.81 +0.1 63,305 + CA265_RS00265 0.82 +1.0 63,404 - -0.8 63,406 + +0.7 63,569 + CA265_RS00270 0.14 +5.0 63,720 + CA265_RS00270 0.30 +1.6 64,162 + CA265_RS00270 0.76 -1.1 64,162 + CA265_RS00270 0.76 +0.1 64,408 + -1.6 64,418 - +2.8 64,442 + -0.0 64,458 - +0.2 64,506 - +1.7 64,571 + CA265_RS00275 0.10 +0.8 64,689 + CA265_RS00275 0.17 +0.4 64,691 + CA265_RS00275 0.17 -0.2 64,694 + CA265_RS00275 0.17 +0.9 64,700 - CA265_RS00275 0.18 -0.5 64,761 + CA265_RS00275 0.21 +0.4 64,762 - CA265_RS00275 0.21 -0.7 64,768 + CA265_RS00275 0.21 +0.0 64,768 + CA265_RS00275 0.21 -1.6 64,776 + CA265_RS00275 0.22 +1.3 64,802 + CA265_RS00275 0.23 -1.0 64,853 + CA265_RS00275 0.26 -0.0 64,879 + CA265_RS00275 0.28 -1.4 64,964 + CA265_RS00275 0.33 +1.1 64,965 - CA265_RS00275 0.33 +0.6 64,972 + CA265_RS00275 0.33 -1.4 64,972 + CA265_RS00275 0.33 +0.4 64,972 + CA265_RS00275 0.33 +1.0 64,973 - CA265_RS00275 0.33 +1.4 65,028 - CA265_RS00275 0.36 +1.4 65,162 + CA265_RS00275 0.44 -0.8 65,211 + CA265_RS00275 0.47 -0.3 65,273 + CA265_RS00275 0.51 +1.0 65,346 + CA265_RS00275 0.55 -0.2 65,347 - CA265_RS00275 0.55 +1.0 65,347 - CA265_RS00275 0.55 -2.0 65,356 + CA265_RS00275 0.55 +0.1 65,357 - CA265_RS00275 0.55 +0.8 65,357 - CA265_RS00275 0.55 -0.5 65,367 - CA265_RS00275 0.56 -3.0 65,377 + CA265_RS00275 0.57 +0.7 65,378 - CA265_RS00275 0.57 +0.4
Or see this region's nucleotide sequence