Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4736

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4734 and Ac3H11_4735 are separated by 249 nucleotidesAc3H11_4735 and Ac3H11_4736 are separated by 6 nucleotidesAc3H11_4736 and Ac3H11_4737 overlap by 4 nucleotidesAc3H11_4737 and Ac3H11_4738 overlap by 8 nucleotides Ac3H11_4734 - hypothetical protein, at 41,722 to 42,270 _4734 Ac3H11_4735 - Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19), at 42,520 to 42,909 _4735 Ac3H11_4736 - Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31), at 42,916 to 43,290 _4736 Ac3H11_4737 - Probable transmembrane protein, at 43,287 to 43,673 _4737 Ac3H11_4738 - Ferredoxin reductase, at 43,666 to 44,715 _4738 Position (kb) 42 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 42.017 kb on + strand, within Ac3H11_4734at 42.067 kb on + strand, within Ac3H11_4734at 42.067 kb on + strand, within Ac3H11_4734at 42.067 kb on + strand, within Ac3H11_4734at 42.067 kb on + strand, within Ac3H11_4734at 42.068 kb on - strand, within Ac3H11_4734at 42.196 kb on + strand, within Ac3H11_4734at 42.214 kb on + strand, within Ac3H11_4734at 42.214 kb on + strand, within Ac3H11_4734at 42.214 kb on + strand, within Ac3H11_4734at 42.214 kb on + strand, within Ac3H11_4734at 42.214 kb on + strand, within Ac3H11_4734at 42.214 kb on + strand, within Ac3H11_4734at 42.214 kb on + strand, within Ac3H11_4734at 42.215 kb on - strand, within Ac3H11_4734at 42.215 kb on - strand, within Ac3H11_4734at 42.215 kb on - strand, within Ac3H11_4734at 42.268 kb on + strandat 42.273 kb on - strandat 42.273 kb on - strandat 42.312 kb on + strandat 42.312 kb on + strandat 42.313 kb on - strandat 42.313 kb on - strandat 42.313 kb on - strandat 42.316 kb on + strandat 42.317 kb on - strandat 42.317 kb on - strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.901 kb on + strandat 42.907 kb on + strandat 42.907 kb on + strandat 42.907 kb on + strandat 42.907 kb on + strandat 42.907 kb on + strandat 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.359 kb on + strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.360 kb on - strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.536 kb on + strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.537 kb on - strand, within Ac3H11_4737at 43.617 kb on + strand, within Ac3H11_4737at 43.692 kb on + strandat 43.692 kb on + strandat 44.030 kb on - strand, within Ac3H11_4738at 44.049 kb on + strand, within Ac3H11_4738at 44.129 kb on + strand, within Ac3H11_4738at 44.278 kb on + strand, within Ac3H11_4738

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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42,017 + Ac3H11_4734 0.54 -0.1
42,067 + Ac3H11_4734 0.63 -0.3
42,067 + Ac3H11_4734 0.63 -0.2
42,067 + Ac3H11_4734 0.63 +0.6
42,067 + Ac3H11_4734 0.63 -0.5
42,068 - Ac3H11_4734 0.63 -0.1
42,196 + Ac3H11_4734 0.86 +0.0
42,214 + Ac3H11_4734 0.90 +0.2
42,214 + Ac3H11_4734 0.90 +1.6
42,214 + Ac3H11_4734 0.90 -0.1
42,214 + Ac3H11_4734 0.90 +0.8
42,214 + Ac3H11_4734 0.90 -0.4
42,214 + Ac3H11_4734 0.90 +0.4
42,214 + Ac3H11_4734 0.90 -1.2
42,215 - Ac3H11_4734 0.90 +0.2
42,215 - Ac3H11_4734 0.90 -0.5
42,215 - Ac3H11_4734 0.90 +0.7
42,268 + +0.4
42,273 - +0.6
42,273 - +0.7
42,312 + +0.1
42,312 + -0.0
42,313 - -1.4
42,313 - +0.7
42,313 - +0.3
42,316 + +0.1
42,317 - +0.1
42,317 - +1.1
42,901 + -0.9
42,901 + +1.8
42,901 + +1.2
42,901 + -2.8
42,901 + -0.2
42,901 + -0.7
42,901 + +0.7
42,901 + -0.1
42,907 + -0.0
42,907 + +0.3
42,907 + -0.7
42,907 + +0.2
42,907 + -0.4
43,359 + Ac3H11_4737 0.19 -0.1
43,359 + Ac3H11_4737 0.19 -2.4
43,359 + Ac3H11_4737 0.19 -1.9
43,359 + Ac3H11_4737 0.19 -1.3
43,359 + Ac3H11_4737 0.19 -0.8
43,359 + Ac3H11_4737 0.19 -2.1
43,359 + Ac3H11_4737 0.19 -0.7
43,359 + Ac3H11_4737 0.19 -1.6
43,359 + Ac3H11_4737 0.19 +0.1
43,359 + Ac3H11_4737 0.19 -1.1
43,359 + Ac3H11_4737 0.19 -2.3
43,359 + Ac3H11_4737 0.19 -0.2
43,359 + Ac3H11_4737 0.19 +0.2
43,359 + Ac3H11_4737 0.19 -1.7
43,359 + Ac3H11_4737 0.19 -0.5
43,359 + Ac3H11_4737 0.19 -0.4
43,359 + Ac3H11_4737 0.19 -0.2
43,359 + Ac3H11_4737 0.19 -1.2
43,359 + Ac3H11_4737 0.19 -0.3
43,360 - Ac3H11_4737 0.19 -1.0
43,360 - Ac3H11_4737 0.19 -0.5
43,360 - Ac3H11_4737 0.19 +0.8
43,360 - Ac3H11_4737 0.19 +0.3
43,360 - Ac3H11_4737 0.19 -0.2
43,360 - Ac3H11_4737 0.19 -0.2
43,360 - Ac3H11_4737 0.19 -0.2
43,360 - Ac3H11_4737 0.19 +0.1
43,360 - Ac3H11_4737 0.19 -0.7
43,360 - Ac3H11_4737 0.19 +0.5
43,360 - Ac3H11_4737 0.19 -0.1
43,360 - Ac3H11_4737 0.19 -1.9
43,360 - Ac3H11_4737 0.19 -1.4
43,360 - Ac3H11_4737 0.19 -0.9
43,360 - Ac3H11_4737 0.19 -0.4
43,360 - Ac3H11_4737 0.19 -0.5
43,360 - Ac3H11_4737 0.19 -0.5
43,360 - Ac3H11_4737 0.19 -2.1
43,360 - Ac3H11_4737 0.19 -0.7
43,536 + Ac3H11_4737 0.64 -2.3
43,536 + Ac3H11_4737 0.64 +1.1
43,536 + Ac3H11_4737 0.64 -0.2
43,536 + Ac3H11_4737 0.64 -0.3
43,536 + Ac3H11_4737 0.64 -0.5
43,536 + Ac3H11_4737 0.64 -1.1
43,536 + Ac3H11_4737 0.64 -0.8
43,536 + Ac3H11_4737 0.64 +0.2
43,536 + Ac3H11_4737 0.64 -0.8
43,536 + Ac3H11_4737 0.64 -1.4
43,536 + Ac3H11_4737 0.64 -0.9
43,536 + Ac3H11_4737 0.64 -0.2
43,536 + Ac3H11_4737 0.64 -0.1
43,536 + Ac3H11_4737 0.64 -1.9
43,536 + Ac3H11_4737 0.64 +0.1
43,536 + Ac3H11_4737 0.64 -0.1
43,536 + Ac3H11_4737 0.64 -1.6
43,536 + Ac3H11_4737 0.64 -0.6
43,537 - Ac3H11_4737 0.65 +0.4
43,537 - Ac3H11_4737 0.65 -1.1
43,537 - Ac3H11_4737 0.65 -0.9
43,537 - Ac3H11_4737 0.65 +0.2
43,537 - Ac3H11_4737 0.65 -1.2
43,537 - Ac3H11_4737 0.65 +0.8
43,537 - Ac3H11_4737 0.65 +0.6
43,537 - Ac3H11_4737 0.65 -0.9
43,537 - Ac3H11_4737 0.65 -0.8
43,537 - Ac3H11_4737 0.65 -3.3
43,537 - Ac3H11_4737 0.65 -0.1
43,617 + Ac3H11_4737 0.85 -1.3
43,692 + -2.1
43,692 + -0.2
44,030 - Ac3H11_4738 0.35 +0.3
44,049 + Ac3H11_4738 0.36 -2.3
44,129 + Ac3H11_4738 0.44 +0.6
44,278 + Ac3H11_4738 0.58 -0.3

Or see this region's nucleotide sequence