Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_387

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_386 and Ac3H11_387 are separated by 250 nucleotidesAc3H11_387 and Ac3H11_388 are separated by 122 nucleotides Ac3H11_386 - ATP-dependent RNA helicase RhlE, at 65,124 to 66,935 _386 Ac3H11_387 - ABC transporter ATP-binding protein, at 67,186 to 68,847 _387 Ac3H11_388 - Thymidine phosphorylase (EC 2.4.2.4), at 68,970 to 71,456 _388 Position (kb) 67 68 69Strain fitness (log2 ratio) -3 -2 -1 0 1at 66.646 kb on - strand, within Ac3H11_386at 67.125 kb on + strandat 67.125 kb on + strandat 67.172 kb on + strandat 67.172 kb on + strandat 68.845 kb on + strandat 68.845 kb on + strandat 68.856 kb on + strandat 68.895 kb on + strandat 68.895 kb on + strandat 68.961 kb on - strandat 69.117 kb on + strandat 69.117 kb on + strandat 69.118 kb on - strandat 69.118 kb on - strandat 69.153 kb on + strandat 69.348 kb on - strand, within Ac3H11_388at 69.348 kb on - strand, within Ac3H11_388at 69.348 kb on - strand, within Ac3H11_388at 69.417 kb on + strand, within Ac3H11_388at 69.417 kb on + strand, within Ac3H11_388at 69.417 kb on + strand, within Ac3H11_388at 69.417 kb on + strand, within Ac3H11_388at 69.418 kb on - strand, within Ac3H11_388at 69.418 kb on - strand, within Ac3H11_388at 69.418 kb on - strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.421 kb on + strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.422 kb on - strand, within Ac3H11_388at 69.520 kb on + strand, within Ac3H11_388at 69.521 kb on - strand, within Ac3H11_388at 69.521 kb on - strand, within Ac3H11_388at 69.528 kb on + strand, within Ac3H11_388at 69.528 kb on + strand, within Ac3H11_388at 69.529 kb on - strand, within Ac3H11_388at 69.579 kb on + strand, within Ac3H11_388at 69.579 kb on + strand, within Ac3H11_388at 69.580 kb on - strand, within Ac3H11_388at 69.580 kb on - strand, within Ac3H11_388at 69.580 kb on - strand, within Ac3H11_388at 69.639 kb on + strand, within Ac3H11_388at 69.640 kb on - strand, within Ac3H11_388at 69.654 kb on + strand, within Ac3H11_388at 69.654 kb on + strand, within Ac3H11_388at 69.655 kb on - strand, within Ac3H11_388at 69.655 kb on - strand, within Ac3H11_388at 69.655 kb on - strand, within Ac3H11_388at 69.675 kb on + strand, within Ac3H11_388at 69.688 kb on - strand, within Ac3H11_388at 69.696 kb on + strand, within Ac3H11_388

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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66,646 - Ac3H11_386 0.84 -1.5
67,125 + +0.3
67,125 + +0.1
67,172 + +0.1
67,172 + -0.5
68,845 + +1.2
68,845 + -0.5
68,856 + -0.7
68,895 + -2.4
68,895 + -0.9
68,961 - +1.2
69,117 + +0.6
69,117 + -0.3
69,118 - -0.5
69,118 - +0.1
69,153 + +1.1
69,348 - Ac3H11_388 0.15 -0.2
69,348 - Ac3H11_388 0.15 +0.7
69,348 - Ac3H11_388 0.15 +0.6
69,417 + Ac3H11_388 0.18 +0.4
69,417 + Ac3H11_388 0.18 -0.6
69,417 + Ac3H11_388 0.18 -0.4
69,417 + Ac3H11_388 0.18 +0.6
69,418 - Ac3H11_388 0.18 -0.2
69,418 - Ac3H11_388 0.18 +0.1
69,418 - Ac3H11_388 0.18 -0.4
69,421 + Ac3H11_388 0.18 +0.3
69,421 + Ac3H11_388 0.18 +0.3
69,421 + Ac3H11_388 0.18 -0.2
69,421 + Ac3H11_388 0.18 +1.5
69,421 + Ac3H11_388 0.18 +0.1
69,421 + Ac3H11_388 0.18 -1.3
69,421 + Ac3H11_388 0.18 -3.0
69,421 + Ac3H11_388 0.18 +0.8
69,421 + Ac3H11_388 0.18 +1.2
69,422 - Ac3H11_388 0.18 -0.4
69,422 - Ac3H11_388 0.18 -0.4
69,422 - Ac3H11_388 0.18 +0.2
69,422 - Ac3H11_388 0.18 +0.7
69,422 - Ac3H11_388 0.18 -0.1
69,422 - Ac3H11_388 0.18 -0.9
69,422 - Ac3H11_388 0.18 +0.3
69,422 - Ac3H11_388 0.18 +0.2
69,422 - Ac3H11_388 0.18 -0.0
69,422 - Ac3H11_388 0.18 +0.5
69,520 + Ac3H11_388 0.22 +0.0
69,521 - Ac3H11_388 0.22 -1.0
69,521 - Ac3H11_388 0.22 +0.1
69,528 + Ac3H11_388 0.22 +0.1
69,528 + Ac3H11_388 0.22 +0.2
69,529 - Ac3H11_388 0.22 +0.2
69,579 + Ac3H11_388 0.24 -1.3
69,579 + Ac3H11_388 0.24 -1.3
69,580 - Ac3H11_388 0.25 +0.9
69,580 - Ac3H11_388 0.25 +0.8
69,580 - Ac3H11_388 0.25 +0.2
69,639 + Ac3H11_388 0.27 +0.5
69,640 - Ac3H11_388 0.27 -0.5
69,654 + Ac3H11_388 0.28 -0.7
69,654 + Ac3H11_388 0.28 +1.1
69,655 - Ac3H11_388 0.28 +0.2
69,655 - Ac3H11_388 0.28 +0.2
69,655 - Ac3H11_388 0.28 +1.0
69,675 + Ac3H11_388 0.28 +1.0
69,688 - Ac3H11_388 0.29 -0.7
69,696 + Ac3H11_388 0.29 +0.4

Or see this region's nucleotide sequence