Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2838 and Ac3H11_2839 are separated by 218 nucleotides Ac3H11_2839 and Ac3H11_2840 are separated by 98 nucleotides Ac3H11_2840 and Ac3H11_2841 are separated by 41 nucleotides Ac3H11_2841 and Ac3H11_2842 are separated by 3 nucleotides
Ac3H11_2838 - L-lactate dehydrogenase (EC 1.1.2.3), at 1,145,543 to 1,146,688
_2838
Ac3H11_2839 - FOG: HEAT repeat, at 1,146,907 to 1,147,116
_2839
Ac3H11_2840 - Ferric siderophore transport system, periplasmic binding protein TonB, at 1,147,215 to 1,147,901
_2840
Ac3H11_2841 - MotA/TolQ/ExbB proton channel family protein, at 1,147,943 to 1,148,662
_2841
Ac3H11_2842 - Biopolymer transport protein ExbD/TolR, at 1,148,666 to 1,149,073
_2842
Position (kb)
1147
1148 Strain fitness (log2 ratio)
-2
-1
0
1 at 1146.799 kb on + strand at 1147.156 kb on - strand at 1147.169 kb on + strand at 1147.187 kb on + strand at 1147.214 kb on + strand at 1147.214 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.660 kb on + strand at 1148.661 kb on - strand at 1148.661 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,146,799 + +0.2 1,147,156 - +0.3 1,147,169 + +0.2 1,147,187 + -0.6 1,147,214 + +0.5 1,147,214 + -0.8 1,148,660 + +0.2 1,148,660 + -1.3 1,148,660 + -0.8 1,148,660 + +0.0 1,148,660 + +0.6 1,148,660 + -0.3 1,148,660 + +1.0 1,148,660 + +0.6 1,148,660 + -0.5 1,148,661 - -1.8 1,148,661 - -0.7
Or see this region's nucleotide sequence