Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1799

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1798 and Ac3H11_1799 are separated by 106 nucleotidesAc3H11_1799 and Ac3H11_1800 are separated by 117 nucleotides Ac3H11_1798 - GTP-binding protein EngA, at 19,086 to 20,408 _1798 Ac3H11_1799 - RNA-binding protein Hfq, at 20,515 to 20,769 _1799 Ac3H11_1800 - GTP-binding protein HflX, at 20,887 to 22,008 _1800 Position (kb) 20 21Strain fitness (log2 ratio) -2 -1 0 1at 20.406 kb on + strandat 20.406 kb on + strandat 20.406 kb on + strandat 20.814 kb on + strandat 20.814 kb on + strandat 20.815 kb on - strandat 20.815 kb on - strandat 20.873 kb on + strandat 20.873 kb on + strandat 20.976 kb on + strandat 20.976 kb on + strandat 20.976 kb on + strandat 20.977 kb on - strandat 20.977 kb on - strandat 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.363 kb on + strand, within Ac3H11_1800at 21.363 kb on + strand, within Ac3H11_1800at 21.363 kb on + strand, within Ac3H11_1800at 21.364 kb on - strand, within Ac3H11_1800at 21.364 kb on - strand, within Ac3H11_1800at 21.432 kb on + strand, within Ac3H11_1800at 21.432 kb on + strand, within Ac3H11_1800at 21.433 kb on - strand, within Ac3H11_1800at 21.457 kb on + strand, within Ac3H11_1800at 21.458 kb on - strand, within Ac3H11_1800at 21.458 kb on - strand, within Ac3H11_1800at 21.458 kb on - strand, within Ac3H11_1800at 21.511 kb on + strand, within Ac3H11_1800at 21.562 kb on + strand, within Ac3H11_1800at 21.562 kb on + strand, within Ac3H11_1800at 21.562 kb on + strand, within Ac3H11_1800at 21.562 kb on + strand, within Ac3H11_1800at 21.563 kb on - strand, within Ac3H11_1800at 21.563 kb on - strand, within Ac3H11_1800at 21.600 kb on + strand, within Ac3H11_1800at 21.601 kb on - strand, within Ac3H11_1800at 21.612 kb on + strand, within Ac3H11_1800at 21.613 kb on - strand, within Ac3H11_1800

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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20,406 + +0.3
20,406 + +0.3
20,406 + +0.7
20,814 + +0.5
20,814 + -0.5
20,815 - +0.4
20,815 - +0.0
20,873 + -2.1
20,873 + +0.0
20,976 + -1.4
20,976 + +0.5
20,976 + +0.5
20,977 - -0.7
20,977 - +0.5
21,232 + Ac3H11_1800 0.31 +0.2
21,232 + Ac3H11_1800 0.31 -0.4
21,232 + Ac3H11_1800 0.31 +1.3
21,232 + Ac3H11_1800 0.31 +1.2
21,232 + Ac3H11_1800 0.31 -0.6
21,232 + Ac3H11_1800 0.31 +1.7
21,232 + Ac3H11_1800 0.31 -0.9
21,232 + Ac3H11_1800 0.31 +0.8
21,233 - Ac3H11_1800 0.31 +0.0
21,233 - Ac3H11_1800 0.31 -0.3
21,233 - Ac3H11_1800 0.31 -2.1
21,233 - Ac3H11_1800 0.31 +0.3
21,233 - Ac3H11_1800 0.31 -1.2
21,233 - Ac3H11_1800 0.31 -1.4
21,233 - Ac3H11_1800 0.31 -1.3
21,233 - Ac3H11_1800 0.31 -0.8
21,233 - Ac3H11_1800 0.31 -1.4
21,233 - Ac3H11_1800 0.31 -0.8
21,363 + Ac3H11_1800 0.42 -0.5
21,363 + Ac3H11_1800 0.42 -1.1
21,363 + Ac3H11_1800 0.42 -0.7
21,364 - Ac3H11_1800 0.43 -0.7
21,364 - Ac3H11_1800 0.43 -0.2
21,432 + Ac3H11_1800 0.49 -0.2
21,432 + Ac3H11_1800 0.49 -0.4
21,433 - Ac3H11_1800 0.49 -2.3
21,457 + Ac3H11_1800 0.51 +0.7
21,458 - Ac3H11_1800 0.51 +0.2
21,458 - Ac3H11_1800 0.51 -1.3
21,458 - Ac3H11_1800 0.51 -2.3
21,511 + Ac3H11_1800 0.56 +0.0
21,562 + Ac3H11_1800 0.60 -0.2
21,562 + Ac3H11_1800 0.60 -1.5
21,562 + Ac3H11_1800 0.60 -1.1
21,562 + Ac3H11_1800 0.60 -0.2
21,563 - Ac3H11_1800 0.60 -0.7
21,563 - Ac3H11_1800 0.60 -1.0
21,600 + Ac3H11_1800 0.64 +0.8
21,601 - Ac3H11_1800 0.64 +0.8
21,612 + Ac3H11_1800 0.65 -1.1
21,613 - Ac3H11_1800 0.65 -1.0

Or see this region's nucleotide sequence