Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29580 and AZOBR_RS29585 are separated by 920 nucleotides AZOBR_RS29585 and AZOBR_RS29590 are separated by 30 nucleotides AZOBR_RS29590 and AZOBR_RS29595 overlap by 11 nucleotides
AZOBR_RS29580: AZOBR_RS29580 - hypothetical protein, at 766,187 to 767,638
_RS29580
AZOBR_RS29585: AZOBR_RS29585 - hypothetical protein, at 768,559 to 768,846
_RS29585
AZOBR_RS29590: AZOBR_RS29590 - hypothetical protein, at 768,877 to 769,620
_RS29590
AZOBR_RS29595: AZOBR_RS29595 - hypothetical protein, at 769,610 to 770,242
_RS29595
Position (kb) 768
769 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 767.564 kb on + strand at 767.564 kb on + strand at 767.564 kb on + strand at 767.564 kb on + strand at 767.564 kb on + strand at 767.565 kb on - strand at 767.565 kb on - strand at 767.676 kb on + strand at 767.676 kb on + strand at 767.676 kb on + strand at 767.677 kb on - strand at 767.677 kb on - strand at 767.677 kb on - strand at 768.018 kb on - strand at 768.018 kb on - strand at 768.099 kb on + strand at 768.146 kb on + strand at 768.146 kb on + strand at 768.146 kb on + strand at 768.146 kb on + strand at 768.147 kb on - strand at 768.147 kb on - strand at 768.147 kb on - strand at 768.296 kb on + strand at 768.297 kb on - strand at 768.297 kb on - strand at 768.813 kb on + strand, within AZOBR_RS29585 at 768.814 kb on - strand, within AZOBR_RS29585 at 768.847 kb on + strand at 768.847 kb on + strand at 768.878 kb on + strand at 769.038 kb on + strand, within AZOBR_RS29590 at 769.038 kb on + strand, within AZOBR_RS29590 at 769.039 kb on - strand, within AZOBR_RS29590 at 769.072 kb on - strand, within AZOBR_RS29590 at 769.087 kb on + strand, within AZOBR_RS29590 at 769.087 kb on + strand, within AZOBR_RS29590 at 769.088 kb on - strand, within AZOBR_RS29590 at 769.088 kb on - strand, within AZOBR_RS29590 at 769.158 kb on - strand, within AZOBR_RS29590 at 769.158 kb on - strand, within AZOBR_RS29590 at 769.251 kb on - strand, within AZOBR_RS29590 at 769.251 kb on - strand, within AZOBR_RS29590 at 769.251 kb on - strand, within AZOBR_RS29590 at 769.643 kb on - strand at 769.707 kb on + strand, within AZOBR_RS29595 at 769.707 kb on + strand, within AZOBR_RS29595 at 769.707 kb on + strand, within AZOBR_RS29595 at 769.708 kb on - strand, within AZOBR_RS29595 at 769.708 kb on - strand, within AZOBR_RS29595 at 769.708 kb on - strand, within AZOBR_RS29595 at 769.708 kb on - strand, within AZOBR_RS29595 at 769.708 kb on - strand, within AZOBR_RS29595 at 769.722 kb on + strand, within AZOBR_RS29595 at 769.722 kb on + strand, within AZOBR_RS29595 at 769.723 kb on - strand, within AZOBR_RS29595 at 769.723 kb on - strand, within AZOBR_RS29595
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 767,564 + +0.1 767,564 + +0.2 767,564 + -1.2 767,564 + +0.2 767,564 + +0.2 767,565 - -0.2 767,565 - -0.3 767,676 + -0.3 767,676 + -0.7 767,676 + -0.3 767,677 - -0.6 767,677 - -0.3 767,677 - -0.1 768,018 - -0.3 768,018 - +0.6 768,099 + +0.2 768,146 + +0.0 768,146 + +0.7 768,146 + -0.7 768,146 + -1.0 768,147 - -0.4 768,147 - -0.4 768,147 - +0.1 768,296 + -0.6 768,297 - +0.3 768,297 - -0.6 768,813 + AZOBR_RS29585 0.88 -0.6 768,814 - AZOBR_RS29585 0.89 -2.0 768,847 + -0.1 768,847 + +0.0 768,878 + -1.7 769,038 + AZOBR_RS29590 0.22 +0.4 769,038 + AZOBR_RS29590 0.22 -0.5 769,039 - AZOBR_RS29590 0.22 -0.3 769,072 - AZOBR_RS29590 0.26 -0.2 769,087 + AZOBR_RS29590 0.28 +0.2 769,087 + AZOBR_RS29590 0.28 -1.1 769,088 - AZOBR_RS29590 0.28 -3.0 769,088 - AZOBR_RS29590 0.28 -0.1 769,158 - AZOBR_RS29590 0.38 -0.2 769,158 - AZOBR_RS29590 0.38 -0.0 769,251 - AZOBR_RS29590 0.50 +0.2 769,251 - AZOBR_RS29590 0.50 -0.2 769,251 - AZOBR_RS29590 0.50 -0.2 769,643 - -0.1 769,707 + AZOBR_RS29595 0.15 -0.5 769,707 + AZOBR_RS29595 0.15 -0.2 769,707 + AZOBR_RS29595 0.15 +0.2 769,708 - AZOBR_RS29595 0.15 +1.0 769,708 - AZOBR_RS29595 0.15 -0.1 769,708 - AZOBR_RS29595 0.15 -1.2 769,708 - AZOBR_RS29595 0.15 +0.4 769,708 - AZOBR_RS29595 0.15 +0.1 769,722 + AZOBR_RS29595 0.18 -0.8 769,722 + AZOBR_RS29595 0.18 -0.5 769,723 - AZOBR_RS29595 0.18 -0.5 769,723 - AZOBR_RS29595 0.18 -0.5
Or see this region's nucleotide sequence