Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29580 and AZOBR_RS29585 are separated by 920 nucleotides
AZOBR_RS29580: AZOBR_RS29580 - hypothetical protein, at 766,187 to 767,638
_RS29580
AZOBR_RS29585: AZOBR_RS29585 - hypothetical protein, at 768,559 to 768,846
_RS29585
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 765.282 kb on + strand at 765.283 kb on - strand at 765.474 kb on + strand at 765.475 kb on - strand at 765.540 kb on + strand at 765.540 kb on + strand at 765.541 kb on - strand at 765.541 kb on - strand at 765.702 kb on + strand at 765.702 kb on + strand at 765.702 kb on + strand at 765.702 kb on + strand at 765.703 kb on - strand at 765.703 kb on - strand at 765.703 kb on - strand at 765.745 kb on + strand at 765.746 kb on - strand at 765.746 kb on - strand at 765.747 kb on + strand at 765.747 kb on + strand at 765.747 kb on + strand at 765.747 kb on + strand at 765.747 kb on + strand at 765.747 kb on + strand at 765.747 kb on + strand at 765.747 kb on + strand at 765.747 kb on + strand at 765.748 kb on - strand at 765.748 kb on - strand at 765.748 kb on - strand at 765.748 kb on - strand at 765.748 kb on - strand at 765.748 kb on - strand at 766.065 kb on + strand at 766.065 kb on + strand at 766.065 kb on + strand at 766.065 kb on + strand at 766.065 kb on + strand at 766.065 kb on + strand at 766.065 kb on + strand at 766.066 kb on - strand at 766.066 kb on - strand at 766.066 kb on - strand at 766.066 kb on - strand at 766.193 kb on + strand at 766.193 kb on + strand at 766.194 kb on - strand at 766.194 kb on - strand at 766.670 kb on + strand, within AZOBR_RS29580 at 766.671 kb on - strand, within AZOBR_RS29580 at 766.671 kb on - strand, within AZOBR_RS29580 at 766.671 kb on - strand, within AZOBR_RS29580 at 766.835 kb on + strand, within AZOBR_RS29580 at 766.836 kb on - strand, within AZOBR_RS29580 at 766.836 kb on - strand, within AZOBR_RS29580 at 766.836 kb on - strand, within AZOBR_RS29580 at 766.836 kb on - strand, within AZOBR_RS29580 at 767.279 kb on + strand, within AZOBR_RS29580 at 767.280 kb on - strand, within AZOBR_RS29580 at 767.402 kb on - strand, within AZOBR_RS29580 at 767.402 kb on - strand, within AZOBR_RS29580 at 767.402 kb on - strand, within AZOBR_RS29580 at 767.543 kb on + strand at 767.543 kb on + strand at 767.544 kb on - strand at 767.544 kb on - strand at 767.564 kb on + strand at 767.564 kb on + strand at 767.564 kb on + strand at 767.564 kb on + strand at 767.564 kb on + strand at 767.565 kb on - strand at 767.565 kb on - strand at 767.676 kb on + strand at 767.676 kb on + strand at 767.676 kb on + strand at 767.677 kb on - strand at 767.677 kb on - strand at 767.677 kb on - strand at 768.018 kb on - strand at 768.018 kb on - strand at 768.099 kb on + strand at 768.146 kb on + strand at 768.146 kb on + strand at 768.146 kb on + strand at 768.146 kb on + strand at 768.147 kb on - strand at 768.147 kb on - strand at 768.147 kb on - strand at 768.296 kb on + strand at 768.297 kb on - strand at 768.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 765,282 + +0.1 765,283 - -0.5 765,474 + +0.4 765,475 - -0.0 765,540 + -2.4 765,540 + -0.8 765,541 - -0.2 765,541 - -0.1 765,702 + -0.5 765,702 + +0.6 765,702 + +0.4 765,702 + -0.3 765,703 - -0.1 765,703 - -2.7 765,703 - -0.4 765,745 + +0.0 765,746 - -0.2 765,746 - +0.1 765,747 + -0.8 765,747 + +0.0 765,747 + +0.4 765,747 + -0.4 765,747 + -0.6 765,747 + +0.3 765,747 + -1.0 765,747 + -0.4 765,747 + -0.3 765,748 - -0.6 765,748 - -0.4 765,748 - +0.4 765,748 - -0.8 765,748 - -0.6 765,748 - +0.1 766,065 + +1.3 766,065 + -0.3 766,065 + +1.1 766,065 + +0.5 766,065 + +0.8 766,065 + -0.2 766,065 + -2.9 766,066 - -1.1 766,066 - -0.4 766,066 - +0.1 766,066 - +0.4 766,193 + +0.1 766,193 + -0.6 766,194 - -2.1 766,194 - +1.5 766,670 + AZOBR_RS29580 0.33 -1.3 766,671 - AZOBR_RS29580 0.33 -0.1 766,671 - AZOBR_RS29580 0.33 -0.2 766,671 - AZOBR_RS29580 0.33 +0.2 766,835 + AZOBR_RS29580 0.45 +0.2 766,836 - AZOBR_RS29580 0.45 +2.1 766,836 - AZOBR_RS29580 0.45 -0.2 766,836 - AZOBR_RS29580 0.45 +0.1 766,836 - AZOBR_RS29580 0.45 +1.7 767,279 + AZOBR_RS29580 0.75 +0.3 767,280 - AZOBR_RS29580 0.75 +0.1 767,402 - AZOBR_RS29580 0.84 -1.5 767,402 - AZOBR_RS29580 0.84 -0.4 767,402 - AZOBR_RS29580 0.84 -0.3 767,543 + -0.1 767,543 + -1.0 767,544 - -1.1 767,544 - -0.0 767,564 + +0.1 767,564 + +0.2 767,564 + -1.2 767,564 + +0.2 767,564 + +0.2 767,565 - -0.2 767,565 - -0.3 767,676 + -0.3 767,676 + -0.7 767,676 + -0.3 767,677 - -0.6 767,677 - -0.3 767,677 - -0.1 768,018 - -0.3 768,018 - +0.6 768,099 + +0.2 768,146 + +0.0 768,146 + +0.7 768,146 + -0.7 768,146 + -1.0 768,147 - -0.4 768,147 - -0.4 768,147 - +0.1 768,296 + -0.6 768,297 - +0.3 768,297 - -0.6
Or see this region's nucleotide sequence