Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS25015

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS25005 and AZOBR_RS25010 are separated by 127 nucleotidesAZOBR_RS25010 and AZOBR_RS25015 are separated by 125 nucleotidesAZOBR_RS25015 and AZOBR_RS25020 are separated by 22 nucleotides AZOBR_RS25005: AZOBR_RS25005 - hypothetical protein, at 665,179 to 666,372 _RS25005 AZOBR_RS25010: AZOBR_RS25010 - hypothetical protein, at 666,500 to 666,847 _RS25010 AZOBR_RS25015: AZOBR_RS25015 - hypothetical protein, at 666,973 to 667,218 _RS25015 AZOBR_RS25020: AZOBR_RS25020 - hypothetical protein, at 667,241 to 670,030 _RS25020 Position (kb) 666 667 668Strain fitness (log2 ratio) -2 -1 0 1at 665.984 kb on - strand, within AZOBR_RS25005at 666.112 kb on + strand, within AZOBR_RS25005at 666.133 kb on + strand, within AZOBR_RS25005at 666.134 kb on - strand, within AZOBR_RS25005at 666.175 kb on + strand, within AZOBR_RS25005at 666.175 kb on + strand, within AZOBR_RS25005at 666.176 kb on - strand, within AZOBR_RS25005at 666.176 kb on - strand, within AZOBR_RS25005at 666.232 kb on + strand, within AZOBR_RS25005at 666.232 kb on + strand, within AZOBR_RS25005at 666.232 kb on + strand, within AZOBR_RS25005at 666.233 kb on - strand, within AZOBR_RS25005at 666.233 kb on - strand, within AZOBR_RS25005at 666.426 kb on - strandat 666.426 kb on - strandat 666.483 kb on - strandat 666.483 kb on - strandat 666.619 kb on + strand, within AZOBR_RS25010at 666.722 kb on + strand, within AZOBR_RS25010at 666.723 kb on - strand, within AZOBR_RS25010at 666.845 kb on + strandat 666.852 kb on + strandat 666.883 kb on - strandat 666.931 kb on + strandat 667.000 kb on + strand, within AZOBR_RS25015at 667.066 kb on + strand, within AZOBR_RS25015at 667.066 kb on + strand, within AZOBR_RS25015at 667.093 kb on + strand, within AZOBR_RS25015at 667.130 kb on + strand, within AZOBR_RS25015at 667.130 kb on + strand, within AZOBR_RS25015at 667.131 kb on - strand, within AZOBR_RS25015at 667.131 kb on - strand, within AZOBR_RS25015at 667.147 kb on + strand, within AZOBR_RS25015at 667.148 kb on - strand, within AZOBR_RS25015at 667.185 kb on - strand, within AZOBR_RS25015at 667.225 kb on + strandat 667.231 kb on + strandat 667.345 kb on + strandat 667.345 kb on + strandat 667.345 kb on + strandat 667.345 kb on + strandat 667.345 kb on + strandat 667.345 kb on + strandat 667.345 kb on + strandat 667.345 kb on + strandat 667.346 kb on - strandat 667.346 kb on - strandat 667.346 kb on - strandat 667.346 kb on - strandat 667.346 kb on - strandat 667.826 kb on + strand, within AZOBR_RS25020at 667.826 kb on + strand, within AZOBR_RS25020at 667.826 kb on + strand, within AZOBR_RS25020at 667.827 kb on - strand, within AZOBR_RS25020at 667.827 kb on - strand, within AZOBR_RS25020at 667.934 kb on + strand, within AZOBR_RS25020at 667.935 kb on - strand, within AZOBR_RS25020at 667.935 kb on - strand, within AZOBR_RS25020at 667.935 kb on - strand, within AZOBR_RS25020

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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665,984 - AZOBR_RS25005 0.67 +0.1
666,112 + AZOBR_RS25005 0.78 -0.0
666,133 + AZOBR_RS25005 0.80 +0.2
666,134 - AZOBR_RS25005 0.80 -1.1
666,175 + AZOBR_RS25005 0.83 -0.5
666,175 + AZOBR_RS25005 0.83 +0.5
666,176 - AZOBR_RS25005 0.84 -0.2
666,176 - AZOBR_RS25005 0.84 -0.2
666,232 + AZOBR_RS25005 0.88 +0.1
666,232 + AZOBR_RS25005 0.88 -0.6
666,232 + AZOBR_RS25005 0.88 +0.2
666,233 - AZOBR_RS25005 0.88 -0.3
666,233 - AZOBR_RS25005 0.88 -0.4
666,426 - +0.2
666,426 - -0.1
666,483 - +0.7
666,483 - -0.9
666,619 + AZOBR_RS25010 0.34 +0.1
666,722 + AZOBR_RS25010 0.64 -0.1
666,723 - AZOBR_RS25010 0.64 -0.2
666,845 + -0.6
666,852 + -0.8
666,883 - -0.6
666,931 + -0.4
667,000 + AZOBR_RS25015 0.11 +0.1
667,066 + AZOBR_RS25015 0.38 -0.3
667,066 + AZOBR_RS25015 0.38 -0.3
667,093 + AZOBR_RS25015 0.49 -1.3
667,130 + AZOBR_RS25015 0.64 +0.0
667,130 + AZOBR_RS25015 0.64 +0.6
667,131 - AZOBR_RS25015 0.64 -0.1
667,131 - AZOBR_RS25015 0.64 +0.1
667,147 + AZOBR_RS25015 0.71 -0.5
667,148 - AZOBR_RS25015 0.71 -0.9
667,185 - AZOBR_RS25015 0.86 -2.7
667,225 + -0.1
667,231 + -0.1
667,345 + +0.4
667,345 + +0.1
667,345 + -1.6
667,345 + +0.4
667,345 + +1.1
667,345 + -0.8
667,345 + -1.2
667,345 + -0.1
667,346 - +0.5
667,346 - +0.1
667,346 - +0.3
667,346 - +0.7
667,346 - -0.6
667,826 + AZOBR_RS25020 0.21 -0.1
667,826 + AZOBR_RS25020 0.21 +0.3
667,826 + AZOBR_RS25020 0.21 +0.0
667,827 - AZOBR_RS25020 0.21 -0.1
667,827 - AZOBR_RS25020 0.21 +0.1
667,934 + AZOBR_RS25020 0.25 -0.0
667,935 - AZOBR_RS25020 0.25 -0.8
667,935 - AZOBR_RS25020 0.25 -1.4
667,935 - AZOBR_RS25020 0.25 +0.3

Or see this region's nucleotide sequence