Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23485 and AZOBR_RS23490 are separated by 89 nucleotides AZOBR_RS23490 and AZOBR_RS23495 are separated by 31 nucleotides AZOBR_RS23495 and AZOBR_RS23500 are separated by 219 nucleotides
AZOBR_RS23485: AZOBR_RS23485 - peptidase M3, at 298,139 to 300,178
_RS23485
AZOBR_RS23490: AZOBR_RS23490 - hypothetical protein, at 300,268 to 300,843
_RS23490
AZOBR_RS23495: AZOBR_RS23495 - lipoprotein putative (fragment), at 300,875 to 301,486
_RS23495
AZOBR_RS23500: AZOBR_RS23500 - transcriptional regulator IclR family, at 301,706 to 302,494
_RS23500
Position (kb) 300
301
302 Strain fitness (log2 ratio) -2
-1
0
1 at 299.939 kb on + strand, within AZOBR_RS23485 at 299.952 kb on - strand, within AZOBR_RS23485 at 299.954 kb on + strand, within AZOBR_RS23485 at 299.954 kb on + strand, within AZOBR_RS23485 at 299.955 kb on - strand, within AZOBR_RS23485 at 299.955 kb on - strand, within AZOBR_RS23485 at 299.955 kb on - strand, within AZOBR_RS23485 at 299.955 kb on - strand, within AZOBR_RS23485 at 299.955 kb on - strand, within AZOBR_RS23485 at 299.955 kb on - strand, within AZOBR_RS23485 at 299.960 kb on + strand, within AZOBR_RS23485 at 299.960 kb on + strand, within AZOBR_RS23485 at 299.960 kb on + strand, within AZOBR_RS23485 at 300.059 kb on + strand at 300.060 kb on - strand at 300.095 kb on + strand at 300.095 kb on + strand at 300.096 kb on - strand at 300.096 kb on - strand at 300.096 kb on - strand at 300.443 kb on - strand, within AZOBR_RS23490 at 300.863 kb on + strand at 300.863 kb on + strand at 300.863 kb on + strand at 300.863 kb on + strand at 300.864 kb on - strand at 300.864 kb on - strand at 300.864 kb on - strand at 301.171 kb on - strand, within AZOBR_RS23495 at 301.300 kb on - strand, within AZOBR_RS23495 at 301.300 kb on - strand, within AZOBR_RS23495 at 301.300 kb on - strand, within AZOBR_RS23495 at 301.581 kb on - strand at 302.007 kb on + strand, within AZOBR_RS23500 at 302.007 kb on + strand, within AZOBR_RS23500 at 302.008 kb on - strand, within AZOBR_RS23500 at 302.008 kb on - strand, within AZOBR_RS23500 at 302.133 kb on + strand, within AZOBR_RS23500 at 302.139 kb on + strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.140 kb on - strand, within AZOBR_RS23500 at 302.212 kb on - strand, within AZOBR_RS23500 at 302.212 kb on - strand, within AZOBR_RS23500 at 302.250 kb on + strand, within AZOBR_RS23500 at 302.250 kb on + strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.251 kb on - strand, within AZOBR_RS23500 at 302.319 kb on + strand, within AZOBR_RS23500 at 302.320 kb on - strand, within AZOBR_RS23500 at 302.469 kb on + strand at 302.469 kb on + strand at 302.469 kb on + strand at 302.469 kb on + strand at 302.469 kb on + strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand at 302.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 299,939 + AZOBR_RS23485 0.88 +0.1 299,952 - AZOBR_RS23485 0.89 -0.2 299,954 + AZOBR_RS23485 0.89 +0.8 299,954 + AZOBR_RS23485 0.89 -0.6 299,955 - AZOBR_RS23485 0.89 -2.2 299,955 - AZOBR_RS23485 0.89 +0.6 299,955 - AZOBR_RS23485 0.89 +0.0 299,955 - AZOBR_RS23485 0.89 -1.2 299,955 - AZOBR_RS23485 0.89 -2.1 299,955 - AZOBR_RS23485 0.89 +0.6 299,960 + AZOBR_RS23485 0.89 -0.3 299,960 + AZOBR_RS23485 0.89 +0.6 299,960 + AZOBR_RS23485 0.89 -0.2 300,059 + +0.2 300,060 - -0.2 300,095 + +0.3 300,095 + +0.0 300,096 - +1.1 300,096 - -0.0 300,096 - -0.8 300,443 - AZOBR_RS23490 0.30 +0.0 300,863 + +0.6 300,863 + +1.0 300,863 + +0.8 300,863 + +0.4 300,864 - +0.5 300,864 - -0.1 300,864 - +0.8 301,171 - AZOBR_RS23495 0.48 -0.2 301,300 - AZOBR_RS23495 0.69 +0.2 301,300 - AZOBR_RS23495 0.69 +0.2 301,300 - AZOBR_RS23495 0.69 +0.5 301,581 - -1.2 302,007 + AZOBR_RS23500 0.38 +0.6 302,007 + AZOBR_RS23500 0.38 +1.3 302,008 - AZOBR_RS23500 0.38 +0.8 302,008 - AZOBR_RS23500 0.38 +0.6 302,133 + AZOBR_RS23500 0.54 +0.7 302,139 + AZOBR_RS23500 0.55 +0.7 302,140 - AZOBR_RS23500 0.55 -0.8 302,140 - AZOBR_RS23500 0.55 +1.0 302,140 - AZOBR_RS23500 0.55 +1.1 302,140 - AZOBR_RS23500 0.55 +0.9 302,140 - AZOBR_RS23500 0.55 +0.5 302,212 - AZOBR_RS23500 0.64 +0.3 302,212 - AZOBR_RS23500 0.64 -0.2 302,250 + AZOBR_RS23500 0.69 +0.6 302,250 + AZOBR_RS23500 0.69 +0.3 302,251 - AZOBR_RS23500 0.69 +0.3 302,251 - AZOBR_RS23500 0.69 +0.5 302,251 - AZOBR_RS23500 0.69 +1.3 302,251 - AZOBR_RS23500 0.69 +0.4 302,251 - AZOBR_RS23500 0.69 +1.6 302,251 - AZOBR_RS23500 0.69 +0.2 302,319 + AZOBR_RS23500 0.78 +0.5 302,320 - AZOBR_RS23500 0.78 +0.4 302,469 + +0.9 302,469 + +0.4 302,469 + +0.9 302,469 + +0.2 302,469 + +1.1 302,470 - +0.5 302,470 - +0.8 302,470 - +0.8 302,470 - +0.9 302,470 - +0.8 302,470 - +0.9 302,470 - +1.1 302,470 - +0.7
Or see this region's nucleotide sequence