Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23320

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23310 and AZOBR_RS23315 are separated by 53 nucleotidesAZOBR_RS23315 and AZOBR_RS23320 overlap by 7 nucleotidesAZOBR_RS23320 and AZOBR_RS23325 are separated by 466 nucleotides AZOBR_RS23310: AZOBR_RS23310 - hypothetical protein, at 255,402 to 256,379 _RS23310 AZOBR_RS23315: AZOBR_RS23315 - conserved membrane protein of unknown function, at 256,433 to 256,918 _RS23315 AZOBR_RS23320: AZOBR_RS23320 - C4-dicarboxylate ABC transporter permease, at 256,912 to 258,414 _RS23320 AZOBR_RS23325: AZOBR_RS23325 - RNA polymerase sigma70, at 258,881 to 259,414 _RS23325 Position (kb) 256 257 258 259Strain fitness (log2 ratio) -2 -1 0 1 2at 256.252 kb on - strand, within AZOBR_RS23310at 256.252 kb on - strand, within AZOBR_RS23310at 256.291 kb on - strandat 256.496 kb on + strand, within AZOBR_RS23315at 256.709 kb on + strand, within AZOBR_RS23315at 256.709 kb on + strand, within AZOBR_RS23315at 256.710 kb on - strand, within AZOBR_RS23315at 256.710 kb on - strand, within AZOBR_RS23315at 256.867 kb on - strand, within AZOBR_RS23315at 256.867 kb on - strand, within AZOBR_RS23315at 256.867 kb on - strand, within AZOBR_RS23315at 256.911 kb on + strandat 256.911 kb on + strandat 256.912 kb on - strandat 256.922 kb on + strandat 256.987 kb on + strandat 256.987 kb on + strandat 256.987 kb on + strandat 256.987 kb on + strandat 256.987 kb on + strandat 256.987 kb on + strandat 256.987 kb on + strandat 256.988 kb on - strandat 257.179 kb on + strand, within AZOBR_RS23320at 257.179 kb on + strand, within AZOBR_RS23320at 257.179 kb on + strand, within AZOBR_RS23320at 257.743 kb on + strand, within AZOBR_RS23320at 257.743 kb on + strand, within AZOBR_RS23320at 257.744 kb on - strand, within AZOBR_RS23320at 257.744 kb on - strand, within AZOBR_RS23320at 257.744 kb on - strand, within AZOBR_RS23320at 257.854 kb on + strand, within AZOBR_RS23320at 257.854 kb on + strand, within AZOBR_RS23320at 257.854 kb on + strand, within AZOBR_RS23320at 257.854 kb on + strand, within AZOBR_RS23320at 257.854 kb on + strand, within AZOBR_RS23320at 257.854 kb on + strand, within AZOBR_RS23320at 257.854 kb on + strand, within AZOBR_RS23320at 257.854 kb on + strand, within AZOBR_RS23320at 257.855 kb on - strand, within AZOBR_RS23320at 257.855 kb on - strand, within AZOBR_RS23320at 257.855 kb on - strand, within AZOBR_RS23320at 257.855 kb on - strand, within AZOBR_RS23320at 257.855 kb on - strand, within AZOBR_RS23320at 257.855 kb on - strand, within AZOBR_RS23320at 257.855 kb on - strand, within AZOBR_RS23320at 257.855 kb on - strand, within AZOBR_RS23320at 257.977 kb on + strand, within AZOBR_RS23320at 257.978 kb on - strand, within AZOBR_RS23320at 258.080 kb on - strand, within AZOBR_RS23320at 258.182 kb on - strand, within AZOBR_RS23320at 258.496 kb on + strandat 258.830 kb on - strandat 259.227 kb on + strand, within AZOBR_RS23325

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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256,252 - AZOBR_RS23310 0.87 +2.4
256,252 - AZOBR_RS23310 0.87 +1.2
256,291 - +0.2
256,496 + AZOBR_RS23315 0.13 -0.3
256,709 + AZOBR_RS23315 0.57 +0.6
256,709 + AZOBR_RS23315 0.57 +0.2
256,710 - AZOBR_RS23315 0.57 +0.1
256,710 - AZOBR_RS23315 0.57 -0.4
256,867 - AZOBR_RS23315 0.89 -0.5
256,867 - AZOBR_RS23315 0.89 +0.1
256,867 - AZOBR_RS23315 0.89 -0.4
256,911 + -2.4
256,911 + +1.1
256,912 - -0.1
256,922 + -0.4
256,987 + -0.3
256,987 + -0.2
256,987 + -0.7
256,987 + +0.6
256,987 + -0.1
256,987 + +0.1
256,987 + +0.6
256,988 - -0.4
257,179 + AZOBR_RS23320 0.18 -0.5
257,179 + AZOBR_RS23320 0.18 -0.3
257,179 + AZOBR_RS23320 0.18 -0.0
257,743 + AZOBR_RS23320 0.55 -0.3
257,743 + AZOBR_RS23320 0.55 -0.3
257,744 - AZOBR_RS23320 0.55 +0.3
257,744 - AZOBR_RS23320 0.55 -0.1
257,744 - AZOBR_RS23320 0.55 +0.1
257,854 + AZOBR_RS23320 0.63 -0.1
257,854 + AZOBR_RS23320 0.63 +0.1
257,854 + AZOBR_RS23320 0.63 +0.2
257,854 + AZOBR_RS23320 0.63 +0.3
257,854 + AZOBR_RS23320 0.63 +0.4
257,854 + AZOBR_RS23320 0.63 -0.4
257,854 + AZOBR_RS23320 0.63 +0.0
257,854 + AZOBR_RS23320 0.63 -0.8
257,855 - AZOBR_RS23320 0.63 -0.6
257,855 - AZOBR_RS23320 0.63 -0.1
257,855 - AZOBR_RS23320 0.63 +1.0
257,855 - AZOBR_RS23320 0.63 -0.8
257,855 - AZOBR_RS23320 0.63 -0.1
257,855 - AZOBR_RS23320 0.63 -0.3
257,855 - AZOBR_RS23320 0.63 +0.2
257,855 - AZOBR_RS23320 0.63 -0.2
257,977 + AZOBR_RS23320 0.71 -0.4
257,978 - AZOBR_RS23320 0.71 -0.1
258,080 - AZOBR_RS23320 0.78 -0.2
258,182 - AZOBR_RS23320 0.84 -0.1
258,496 + +0.0
258,830 - -0.2
259,227 + AZOBR_RS23325 0.65 +0.1

Or see this region's nucleotide sequence