Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS22500 and AZOBR_RS22505 are separated by 14 nucleotides AZOBR_RS22505 and AZOBR_RS22510 are separated by 176 nucleotides
AZOBR_RS22500: AZOBR_RS22500 - methylmalonate-semialdehyde dehydrogenase, at 58,726 to 60,225
_RS22500
AZOBR_RS22505: AZOBR_RS22505 - omega amino acid--pyruvate aminotransferase, at 60,240 to 61,550
_RS22505
AZOBR_RS22510: AZOBR_RS22510 - LysR family transcriptional regulator, at 61,727 to 62,689
_RS22510
Position (kb) 60
61
62 Strain fitness (log2 ratio) -1
0
1 at 59.526 kb on - strand, within AZOBR_RS22500 at 59.526 kb on - strand, within AZOBR_RS22500 at 59.531 kb on + strand, within AZOBR_RS22500 at 59.532 kb on - strand, within AZOBR_RS22500 at 59.895 kb on - strand, within AZOBR_RS22500 at 60.353 kb on - strand at 60.448 kb on + strand, within AZOBR_RS22505 at 60.448 kb on + strand, within AZOBR_RS22505 at 60.449 kb on - strand, within AZOBR_RS22505 at 60.449 kb on - strand, within AZOBR_RS22505 at 60.449 kb on - strand, within AZOBR_RS22505 at 60.464 kb on + strand, within AZOBR_RS22505 at 60.465 kb on - strand, within AZOBR_RS22505 at 60.604 kb on + strand, within AZOBR_RS22505 at 60.605 kb on - strand, within AZOBR_RS22505 at 60.605 kb on - strand, within AZOBR_RS22505 at 60.611 kb on - strand, within AZOBR_RS22505 at 60.634 kb on + strand, within AZOBR_RS22505 at 60.634 kb on + strand, within AZOBR_RS22505 at 60.634 kb on + strand, within AZOBR_RS22505 at 60.634 kb on + strand, within AZOBR_RS22505 at 60.635 kb on - strand, within AZOBR_RS22505 at 60.635 kb on - strand, within AZOBR_RS22505 at 60.635 kb on - strand, within AZOBR_RS22505 at 60.635 kb on - strand, within AZOBR_RS22505 at 60.667 kb on + strand, within AZOBR_RS22505 at 60.668 kb on - strand, within AZOBR_RS22505 at 61.183 kb on + strand, within AZOBR_RS22505 at 61.330 kb on + strand, within AZOBR_RS22505 at 61.330 kb on + strand, within AZOBR_RS22505 at 61.331 kb on - strand, within AZOBR_RS22505 at 61.331 kb on - strand, within AZOBR_RS22505 at 61.331 kb on - strand, within AZOBR_RS22505 at 61.424 kb on - strand at 61.703 kb on - strand at 61.718 kb on + strand at 61.719 kb on - strand at 61.719 kb on - strand at 61.722 kb on + strand at 61.723 kb on - strand at 61.723 kb on - strand at 62.276 kb on + strand, within AZOBR_RS22510 at 62.277 kb on - strand, within AZOBR_RS22510 at 62.277 kb on - strand, within AZOBR_RS22510 at 62.465 kb on + strand, within AZOBR_RS22510 at 62.466 kb on - strand, within AZOBR_RS22510 at 62.490 kb on - strand, within AZOBR_RS22510 at 62.549 kb on + strand, within AZOBR_RS22510
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 59,526 - AZOBR_RS22500 0.53 +1.0 59,526 - AZOBR_RS22500 0.53 -0.1 59,531 + AZOBR_RS22500 0.54 +0.1 59,532 - AZOBR_RS22500 0.54 -0.3 59,895 - AZOBR_RS22500 0.78 -0.7 60,353 - -0.1 60,448 + AZOBR_RS22505 0.16 -0.1 60,448 + AZOBR_RS22505 0.16 -0.6 60,449 - AZOBR_RS22505 0.16 +0.0 60,449 - AZOBR_RS22505 0.16 +0.5 60,449 - AZOBR_RS22505 0.16 -0.3 60,464 + AZOBR_RS22505 0.17 +0.1 60,465 - AZOBR_RS22505 0.17 +0.4 60,604 + AZOBR_RS22505 0.28 +0.3 60,605 - AZOBR_RS22505 0.28 -0.1 60,605 - AZOBR_RS22505 0.28 +0.2 60,611 - AZOBR_RS22505 0.28 -0.3 60,634 + AZOBR_RS22505 0.30 +0.3 60,634 + AZOBR_RS22505 0.30 +0.6 60,634 + AZOBR_RS22505 0.30 -0.3 60,634 + AZOBR_RS22505 0.30 +0.3 60,635 - AZOBR_RS22505 0.30 +0.1 60,635 - AZOBR_RS22505 0.30 -0.3 60,635 - AZOBR_RS22505 0.30 +1.0 60,635 - AZOBR_RS22505 0.30 -0.2 60,667 + AZOBR_RS22505 0.33 +0.5 60,668 - AZOBR_RS22505 0.33 +0.9 61,183 + AZOBR_RS22505 0.72 +0.1 61,330 + AZOBR_RS22505 0.83 +0.4 61,330 + AZOBR_RS22505 0.83 -0.1 61,331 - AZOBR_RS22505 0.83 +0.4 61,331 - AZOBR_RS22505 0.83 +0.2 61,331 - AZOBR_RS22505 0.83 -0.2 61,424 - -0.4 61,703 - -0.1 61,718 + +0.2 61,719 - -0.4 61,719 - +0.1 61,722 + -0.7 61,723 - +0.3 61,723 - -0.1 62,276 + AZOBR_RS22510 0.57 -0.5 62,277 - AZOBR_RS22510 0.57 +0.3 62,277 - AZOBR_RS22510 0.57 +0.2 62,465 + AZOBR_RS22510 0.77 +0.4 62,466 - AZOBR_RS22510 0.77 -0.2 62,490 - AZOBR_RS22510 0.79 -0.0 62,549 + AZOBR_RS22510 0.85 +0.4
Or see this region's nucleotide sequence