Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15095 and AZOBR_RS15100 overlap by 8 nucleotides AZOBR_RS15100 and AZOBR_RS15105 overlap by 4 nucleotides AZOBR_RS15105 and AZOBR_RS15110 overlap by 4 nucleotides AZOBR_RS15110 and AZOBR_RS15115 overlap by 4 nucleotides AZOBR_RS15115 and AZOBR_RS15120 are separated by 132 nucleotides AZOBR_RS15120 and AZOBR_RS15125 are separated by 10 nucleotides
AZOBR_RS15095: AZOBR_RS15095 - hypothetical protein, at 167,713 to 169,812
_RS15095
AZOBR_RS15100: AZOBR_RS15100 - hypothetical protein, at 169,805 to 170,389
_RS15100
AZOBR_RS15105: AZOBR_RS15105 - hypothetical protein, at 170,386 to 170,703
_RS15105
AZOBR_RS15110: AZOBR_RS15110 - hypothetical protein, at 170,700 to 171,716
_RS15110
AZOBR_RS15115: AZOBR_RS15115 - hypothetical protein, at 171,713 to 172,033
_RS15115
AZOBR_RS15120: AZOBR_RS15120 - hypothetical protein, at 172,166 to 172,573
_RS15120
AZOBR_RS15125: AZOBR_RS15125 - hypothetical protein, at 172,584 to 173,000
_RS15125
Position (kb) 170
171
172 Strain fitness (log2 ratio) -2
-1
0
1
2 at 169.727 kb on + strand at 169.728 kb on - strand at 169.728 kb on - strand at 169.807 kb on - strand at 169.833 kb on + strand at 169.833 kb on + strand at 169.833 kb on + strand at 169.834 kb on - strand at 170.157 kb on + strand, within AZOBR_RS15100 at 170.157 kb on + strand, within AZOBR_RS15100 at 170.157 kb on + strand, within AZOBR_RS15100 at 170.157 kb on + strand, within AZOBR_RS15100 at 170.158 kb on - strand, within AZOBR_RS15100 at 170.268 kb on + strand, within AZOBR_RS15100 at 170.268 kb on + strand, within AZOBR_RS15100 at 170.806 kb on + strand, within AZOBR_RS15110 at 170.806 kb on + strand, within AZOBR_RS15110 at 170.807 kb on - strand, within AZOBR_RS15110 at 170.807 kb on - strand, within AZOBR_RS15110 at 170.807 kb on - strand, within AZOBR_RS15110 at 170.872 kb on + strand, within AZOBR_RS15110 at 170.872 kb on + strand, within AZOBR_RS15110 at 170.872 kb on + strand, within AZOBR_RS15110 at 170.873 kb on - strand, within AZOBR_RS15110 at 170.873 kb on - strand, within AZOBR_RS15110 at 170.873 kb on - strand, within AZOBR_RS15110 at 170.930 kb on + strand, within AZOBR_RS15110 at 171.121 kb on + strand, within AZOBR_RS15110 at 171.122 kb on - strand, within AZOBR_RS15110 at 171.173 kb on - strand, within AZOBR_RS15110 at 171.173 kb on - strand, within AZOBR_RS15110 at 171.682 kb on + strand at 171.682 kb on + strand at 171.682 kb on + strand at 171.682 kb on + strand at 171.750 kb on + strand, within AZOBR_RS15115 at 171.750 kb on + strand, within AZOBR_RS15115 at 171.750 kb on + strand, within AZOBR_RS15115 at 171.751 kb on - strand, within AZOBR_RS15115 at 171.751 kb on - strand, within AZOBR_RS15115 at 171.751 kb on - strand, within AZOBR_RS15115 at 171.869 kb on - strand, within AZOBR_RS15115 at 171.997 kb on - strand, within AZOBR_RS15115 at 171.997 kb on - strand, within AZOBR_RS15115 at 172.531 kb on - strand, within AZOBR_RS15120 at 172.597 kb on + strand at 172.597 kb on + strand at 172.597 kb on + strand at 172.597 kb on + strand at 172.597 kb on + strand at 172.598 kb on - strand at 172.598 kb on - strand at 172.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 169,727 + +0.5 169,728 - +0.7 169,728 - +0.7 169,807 - +0.7 169,833 + +1.1 169,833 + +0.7 169,833 + +1.4 169,834 - +0.8 170,157 + AZOBR_RS15100 0.60 +1.2 170,157 + AZOBR_RS15100 0.60 +0.6 170,157 + AZOBR_RS15100 0.60 +0.8 170,157 + AZOBR_RS15100 0.60 +1.0 170,158 - AZOBR_RS15100 0.60 +0.1 170,268 + AZOBR_RS15100 0.79 +0.7 170,268 + AZOBR_RS15100 0.79 +0.9 170,806 + AZOBR_RS15110 0.10 +0.7 170,806 + AZOBR_RS15110 0.10 +2.2 170,807 - AZOBR_RS15110 0.11 -0.5 170,807 - AZOBR_RS15110 0.11 +1.7 170,807 - AZOBR_RS15110 0.11 +0.1 170,872 + AZOBR_RS15110 0.17 +1.5 170,872 + AZOBR_RS15110 0.17 +0.5 170,872 + AZOBR_RS15110 0.17 +0.5 170,873 - AZOBR_RS15110 0.17 -2.0 170,873 - AZOBR_RS15110 0.17 +0.9 170,873 - AZOBR_RS15110 0.17 +0.8 170,930 + AZOBR_RS15110 0.23 +0.4 171,121 + AZOBR_RS15110 0.41 -0.1 171,122 - AZOBR_RS15110 0.41 +0.4 171,173 - AZOBR_RS15110 0.47 +0.8 171,173 - AZOBR_RS15110 0.47 +0.7 171,682 + +1.6 171,682 + +1.0 171,682 + +1.6 171,682 + +0.5 171,750 + AZOBR_RS15115 0.12 +1.0 171,750 + AZOBR_RS15115 0.12 +0.8 171,750 + AZOBR_RS15115 0.12 +1.2 171,751 - AZOBR_RS15115 0.12 +0.8 171,751 - AZOBR_RS15115 0.12 +0.5 171,751 - AZOBR_RS15115 0.12 +1.0 171,869 - AZOBR_RS15115 0.49 +1.0 171,997 - AZOBR_RS15115 0.88 +0.8 171,997 - AZOBR_RS15115 0.88 +0.9 172,531 - AZOBR_RS15120 0.89 +1.1 172,597 + +1.0 172,597 + +1.0 172,597 + +0.3 172,597 + +0.9 172,597 + +1.0 172,598 - +0.7 172,598 - -0.1 172,598 - +0.5
Or see this region's nucleotide sequence