Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS11095

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS11090 and AZOBR_RS11095 are separated by 447 nucleotidesAZOBR_RS11095 and AZOBR_RS11100 are separated by 268 nucleotidesAZOBR_RS11100 and AZOBR_RS11105 are separated by 27 nucleotides AZOBR_RS11090: AZOBR_RS11090 - alanyl-tRNA synthetase, at 2,332,832 to 2,335,501 _RS11090 AZOBR_RS11095: AZOBR_RS11095 - recombinase RecA, at 2,335,949 to 2,337,028 _RS11095 AZOBR_RS11100: AZOBR_RS11100 - hypothetical protein, at 2,337,297 to 2,337,800 _RS11100 AZOBR_RS11105: AZOBR_RS11105 - histidine kinase, at 2,337,828 to 2,340,353 _RS11105 Position (kb) 2335 2336 2337 2338Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2335.854 kb on - strandat 2336.074 kb on - strand, within AZOBR_RS11095at 2336.119 kb on - strand, within AZOBR_RS11095at 2336.343 kb on + strand, within AZOBR_RS11095at 2336.803 kb on - strand, within AZOBR_RS11095at 2336.803 kb on - strand, within AZOBR_RS11095at 2336.983 kb on + strandat 2337.045 kb on + strandat 2337.045 kb on + strandat 2337.046 kb on - strandat 2337.046 kb on - strandat 2337.138 kb on - strandat 2337.435 kb on + strand, within AZOBR_RS11100at 2337.436 kb on - strand, within AZOBR_RS11100at 2337.436 kb on - strand, within AZOBR_RS11100at 2337.778 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
2,335,854 - -0.9
2,336,074 - AZOBR_RS11095 0.12 -1.7
2,336,119 - AZOBR_RS11095 0.16 -2.2
2,336,343 + AZOBR_RS11095 0.36 -1.8
2,336,803 - AZOBR_RS11095 0.79 -3.9
2,336,803 - AZOBR_RS11095 0.79 -1.1
2,336,983 + -0.9
2,337,045 + +0.3
2,337,045 + -2.3
2,337,046 - +0.2
2,337,046 - -0.0
2,337,138 - -0.3
2,337,435 + AZOBR_RS11100 0.27 -0.3
2,337,436 - AZOBR_RS11100 0.28 +0.3
2,337,436 - AZOBR_RS11100 0.28 +0.6
2,337,778 - -1.4

Or see this region's nucleotide sequence