Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS11080 and AZOBR_RS11085 are separated by 116 nucleotides AZOBR_RS11085 and AZOBR_RS11090 are separated by 104 nucleotides AZOBR_RS11090 and AZOBR_RS11095 are separated by 447 nucleotides
AZOBR_RS11080: AZOBR_RS11080 - ATPase AAA, at 2,331,448 to 2,332,293
_RS11080
AZOBR_RS11085: AZOBR_RS11085 - hypothetical protein, at 2,332,410 to 2,332,727
_RS11085
AZOBR_RS11090: AZOBR_RS11090 - alanyl-tRNA synthetase, at 2,332,832 to 2,335,501
_RS11090
AZOBR_RS11095: AZOBR_RS11095 - recombinase RecA, at 2,335,949 to 2,337,028
_RS11095
Position (kb)
2332
2333
2334
2335
2336 Strain fitness (log2 ratio)
-2
-1
0
1 at 2331.875 kb on + strand, within AZOBR_RS11080 at 2331.875 kb on + strand, within AZOBR_RS11080 at 2331.875 kb on + strand, within AZOBR_RS11080 at 2331.876 kb on - strand, within AZOBR_RS11080 at 2332.013 kb on + strand, within AZOBR_RS11080 at 2332.013 kb on + strand, within AZOBR_RS11080 at 2332.013 kb on + strand, within AZOBR_RS11080 at 2332.013 kb on + strand, within AZOBR_RS11080 at 2332.013 kb on + strand, within AZOBR_RS11080 at 2332.014 kb on - strand, within AZOBR_RS11080 at 2332.014 kb on - strand, within AZOBR_RS11080 at 2332.014 kb on - strand, within AZOBR_RS11080 at 2332.014 kb on - strand, within AZOBR_RS11080 at 2332.014 kb on - strand, within AZOBR_RS11080 at 2332.080 kb on - strand, within AZOBR_RS11080 at 2332.086 kb on - strand, within AZOBR_RS11080 at 2332.268 kb on + strand at 2332.268 kb on + strand at 2332.268 kb on + strand at 2332.268 kb on + strand at 2332.742 kb on + strand at 2332.742 kb on + strand at 2335.854 kb on - strand at 2336.074 kb on - strand, within AZOBR_RS11095 at 2336.119 kb on - strand, within AZOBR_RS11095 at 2336.343 kb on + strand, within AZOBR_RS11095
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,331,875 + AZOBR_RS11080 0.50 +0.8 2,331,875 + AZOBR_RS11080 0.50 -1.9 2,331,875 + AZOBR_RS11080 0.50 +0.4 2,331,876 - AZOBR_RS11080 0.51 +0.7 2,332,013 + AZOBR_RS11080 0.67 +0.1 2,332,013 + AZOBR_RS11080 0.67 +0.6 2,332,013 + AZOBR_RS11080 0.67 +0.7 2,332,013 + AZOBR_RS11080 0.67 -0.4 2,332,013 + AZOBR_RS11080 0.67 +1.2 2,332,014 - AZOBR_RS11080 0.67 -0.0 2,332,014 - AZOBR_RS11080 0.67 +0.1 2,332,014 - AZOBR_RS11080 0.67 -0.9 2,332,014 - AZOBR_RS11080 0.67 -0.5 2,332,014 - AZOBR_RS11080 0.67 +0.9 2,332,080 - AZOBR_RS11080 0.75 +0.3 2,332,086 - AZOBR_RS11080 0.75 +1.1 2,332,268 + -0.7 2,332,268 + +0.2 2,332,268 + +0.9 2,332,268 + +0.6 2,332,742 + -0.2 2,332,742 + -1.0 2,335,854 - -0.9 2,336,074 - AZOBR_RS11095 0.12 -1.7 2,336,119 - AZOBR_RS11095 0.16 -2.2 2,336,343 + AZOBR_RS11095 0.36 -1.8
Or see this region's nucleotide sequence