Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS06175 and AZOBR_RS06180 overlap by 17 nucleotides AZOBR_RS06180 and AZOBR_RS06185 are separated by 243 nucleotides AZOBR_RS06185 and AZOBR_RS06190 are separated by 57 nucleotides
AZOBR_RS06175: AZOBR_RS06175 - hypothetical protein, at 1,307,602 to 1,309,398
_RS06175
AZOBR_RS06180: AZOBR_RS06180 - flgE (modular protein), at 1,309,382 to 1,310,752
_RS06180
AZOBR_RS06185: AZOBR_RS06185 - carbonic anhydrase, at 1,310,996 to 1,311,688
_RS06185
AZOBR_RS06190: AZOBR_RS06190 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 1,311,746 to 1,312,339
_RS06190
Position (kb)
1309
1310
1311 Strain fitness (log2 ratio)
-1
0
1
2 at 1308.641 kb on - strand, within AZOBR_RS06175 at 1308.788 kb on + strand, within AZOBR_RS06175 at 1308.789 kb on - strand, within AZOBR_RS06175 at 1308.844 kb on + strand, within AZOBR_RS06175 at 1308.844 kb on + strand, within AZOBR_RS06175 at 1308.845 kb on - strand, within AZOBR_RS06175 at 1308.845 kb on - strand, within AZOBR_RS06175 at 1308.845 kb on - strand, within AZOBR_RS06175 at 1308.845 kb on - strand, within AZOBR_RS06175 at 1308.845 kb on - strand, within AZOBR_RS06175 at 1309.383 kb on + strand at 1309.453 kb on - strand at 1309.692 kb on + strand, within AZOBR_RS06180 at 1309.693 kb on - strand, within AZOBR_RS06180 at 1309.698 kb on + strand, within AZOBR_RS06180 at 1309.699 kb on - strand, within AZOBR_RS06180 at 1309.764 kb on + strand, within AZOBR_RS06180 at 1309.764 kb on + strand, within AZOBR_RS06180 at 1309.764 kb on + strand, within AZOBR_RS06180 at 1309.765 kb on - strand, within AZOBR_RS06180 at 1309.765 kb on - strand, within AZOBR_RS06180 at 1309.765 kb on - strand, within AZOBR_RS06180 at 1311.733 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,308,641 - AZOBR_RS06175 0.58 +0.4 1,308,788 + AZOBR_RS06175 0.66 -0.5 1,308,789 - AZOBR_RS06175 0.66 -0.4 1,308,844 + AZOBR_RS06175 0.69 -0.2 1,308,844 + AZOBR_RS06175 0.69 +0.4 1,308,845 - AZOBR_RS06175 0.69 -0.3 1,308,845 - AZOBR_RS06175 0.69 +0.2 1,308,845 - AZOBR_RS06175 0.69 +0.5 1,308,845 - AZOBR_RS06175 0.69 +0.8 1,308,845 - AZOBR_RS06175 0.69 +0.3 1,309,383 + +0.3 1,309,453 - +0.2 1,309,692 + AZOBR_RS06180 0.23 +0.6 1,309,693 - AZOBR_RS06180 0.23 -0.3 1,309,698 + AZOBR_RS06180 0.23 -0.2 1,309,699 - AZOBR_RS06180 0.23 +2.0 1,309,764 + AZOBR_RS06180 0.28 -0.3 1,309,764 + AZOBR_RS06180 0.28 +0.4 1,309,764 + AZOBR_RS06180 0.28 -1.0 1,309,765 - AZOBR_RS06180 0.28 +0.0 1,309,765 - AZOBR_RS06180 0.28 +0.1 1,309,765 - AZOBR_RS06180 0.28 +0.1 1,311,733 - -0.1
Or see this region's nucleotide sequence