Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03395 and AZOBR_RS03400 are separated by 77 nucleotides AZOBR_RS03400 and AZOBR_RS03405 are separated by 88 nucleotides AZOBR_RS03405 and AZOBR_RS03410 are separated by 70 nucleotides
AZOBR_RS03395: AZOBR_RS03395 - Crp/Fnr family transcriptional regulator, at 721,961 to 722,629
_RS03395
AZOBR_RS03400: AZOBR_RS03400 - membrane protein, at 722,707 to 722,898
_RS03400
AZOBR_RS03405: AZOBR_RS03405 - transcriptional regulator, at 722,987 to 723,745
_RS03405
AZOBR_RS03410: AZOBR_RS03410 - multidrug DMT transporter permease, at 723,816 to 724,790
_RS03410
Position (kb) 722
723
724 Strain fitness (log2 ratio) -2
-1
0
1
2 at 722.234 kb on + strand, within AZOBR_RS03395 at 722.695 kb on + strand at 722.696 kb on - strand at 722.696 kb on - strand at 722.857 kb on + strand, within AZOBR_RS03400 at 722.857 kb on + strand, within AZOBR_RS03400 at 722.857 kb on + strand, within AZOBR_RS03400 at 722.858 kb on - strand, within AZOBR_RS03400 at 722.977 kb on + strand at 722.977 kb on + strand at 722.977 kb on + strand at 722.978 kb on - strand at 722.978 kb on - strand at 723.027 kb on - strand at 723.027 kb on - strand at 723.305 kb on + strand at 723.305 kb on + strand, within AZOBR_RS03405 at 723.641 kb on + strand, within AZOBR_RS03405 at 723.704 kb on + strand at 723.937 kb on - strand, within AZOBR_RS03410 at 723.946 kb on - strand, within AZOBR_RS03410 at 723.946 kb on - strand, within AZOBR_RS03410 at 724.059 kb on + strand, within AZOBR_RS03410 at 724.059 kb on + strand, within AZOBR_RS03410 at 724.060 kb on - strand, within AZOBR_RS03410 at 724.060 kb on - strand, within AZOBR_RS03410 at 724.062 kb on + strand, within AZOBR_RS03410 at 724.062 kb on + strand, within AZOBR_RS03410 at 724.063 kb on - strand, within AZOBR_RS03410 at 724.063 kb on - strand, within AZOBR_RS03410 at 724.650 kb on + strand, within AZOBR_RS03410 at 724.650 kb on + strand, within AZOBR_RS03410
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 722,234 + AZOBR_RS03395 0.41 +0.2 722,695 + -1.8 722,696 - -0.4 722,696 - +0.1 722,857 + AZOBR_RS03400 0.78 +1.0 722,857 + AZOBR_RS03400 0.78 +0.0 722,857 + AZOBR_RS03400 0.78 +0.5 722,858 - AZOBR_RS03400 0.79 +1.0 722,977 + -1.3 722,977 + +0.0 722,977 + +1.2 722,978 - +0.7 722,978 - +0.2 723,027 - +1.4 723,027 - -0.0 723,305 + +0.4 723,305 + AZOBR_RS03405 0.42 +1.4 723,641 + AZOBR_RS03405 0.86 +0.2 723,704 + -0.0 723,937 - AZOBR_RS03410 0.12 +0.6 723,946 - AZOBR_RS03410 0.13 -0.1 723,946 - AZOBR_RS03410 0.13 +0.4 724,059 + AZOBR_RS03410 0.25 +1.8 724,059 + AZOBR_RS03410 0.25 +0.1 724,060 - AZOBR_RS03410 0.25 -2.1 724,060 - AZOBR_RS03410 0.25 -0.5 724,062 + AZOBR_RS03410 0.25 +1.0 724,062 + AZOBR_RS03410 0.25 -0.1 724,063 - AZOBR_RS03410 0.25 +0.2 724,063 - AZOBR_RS03410 0.25 -0.8 724,650 + AZOBR_RS03410 0.86 -0.3 724,650 + AZOBR_RS03410 0.86 -0.4
Or see this region's nucleotide sequence