Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02940 and AZOBR_RS02945 are separated by 117 nucleotides AZOBR_RS02945 and AZOBR_RS02950 are separated by 114 nucleotides AZOBR_RS02950 and AZOBR_RS02955 are separated by 35 nucleotides
AZOBR_RS02940: AZOBR_RS02940 - large component of pyruvate transporter (actP-like) <small>(from data)</small>, at 622,100 to 623,818
_RS02940
AZOBR_RS02945: AZOBR_RS02945 - hypothetical protein, at 623,936 to 625,753
_RS02945
AZOBR_RS02950: AZOBR_RS02950 - hypothetical protein, at 625,868 to 626,353
_RS02950
AZOBR_RS02955: AZOBR_RS02955 - histidine kinase, at 626,389 to 628,077
_RS02955
Position (kb) 623
624
625
626 Strain fitness (log2 ratio) -2
-1
0
1
2 at 623.016 kb on - strand, within AZOBR_RS02940 at 623.016 kb on - strand, within AZOBR_RS02940 at 623.036 kb on + strand, within AZOBR_RS02940 at 623.042 kb on + strand, within AZOBR_RS02940 at 623.042 kb on + strand, within AZOBR_RS02940 at 623.327 kb on + strand, within AZOBR_RS02940 at 623.327 kb on + strand, within AZOBR_RS02940 at 623.328 kb on - strand, within AZOBR_RS02940 at 623.756 kb on + strand at 623.757 kb on - strand at 623.757 kb on - strand at 623.768 kb on + strand at 623.768 kb on + strand at 623.769 kb on - strand at 623.816 kb on + strand at 623.816 kb on + strand at 623.862 kb on + strand at 624.246 kb on + strand, within AZOBR_RS02945 at 624.384 kb on - strand, within AZOBR_RS02945 at 624.384 kb on - strand, within AZOBR_RS02945 at 624.384 kb on - strand, within AZOBR_RS02945 at 625.037 kb on + strand, within AZOBR_RS02945 at 625.037 kb on + strand, within AZOBR_RS02945 at 625.037 kb on + strand, within AZOBR_RS02945 at 625.163 kb on + strand, within AZOBR_RS02945 at 625.163 kb on + strand, within AZOBR_RS02945 at 625.164 kb on - strand, within AZOBR_RS02945 at 625.164 kb on - strand, within AZOBR_RS02945 at 625.232 kb on + strand, within AZOBR_RS02945 at 625.286 kb on + strand, within AZOBR_RS02945 at 625.286 kb on + strand, within AZOBR_RS02945 at 625.286 kb on + strand, within AZOBR_RS02945 at 625.286 kb on + strand, within AZOBR_RS02945 at 625.286 kb on + strand, within AZOBR_RS02945 at 625.287 kb on - strand, within AZOBR_RS02945 at 625.731 kb on - strand at 625.731 kb on - strand at 626.093 kb on + strand, within AZOBR_RS02950 at 626.096 kb on + strand, within AZOBR_RS02950 at 626.096 kb on + strand, within AZOBR_RS02950 at 626.096 kb on + strand, within AZOBR_RS02950 at 626.097 kb on - strand, within AZOBR_RS02950 at 626.190 kb on - strand, within AZOBR_RS02950 at 626.190 kb on - strand, within AZOBR_RS02950 at 626.193 kb on - strand, within AZOBR_RS02950 at 626.223 kb on - strand, within AZOBR_RS02950 at 626.295 kb on - strand, within AZOBR_RS02950 at 626.324 kb on + strand at 626.325 kb on - strand at 626.388 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 623,016 - AZOBR_RS02940 0.53 -0.1 623,016 - AZOBR_RS02940 0.53 -0.4 623,036 + AZOBR_RS02940 0.54 -0.5 623,042 + AZOBR_RS02940 0.55 +0.3 623,042 + AZOBR_RS02940 0.55 -0.6 623,327 + AZOBR_RS02940 0.71 +0.4 623,327 + AZOBR_RS02940 0.71 +0.3 623,328 - AZOBR_RS02940 0.71 +0.2 623,756 + +0.3 623,757 - +0.0 623,757 - +0.3 623,768 + +0.3 623,768 + -0.2 623,769 - +0.6 623,816 + +0.2 623,816 + -0.4 623,862 + +0.2 624,246 + AZOBR_RS02945 0.17 +2.7 624,384 - AZOBR_RS02945 0.25 +2.1 624,384 - AZOBR_RS02945 0.25 +0.3 624,384 - AZOBR_RS02945 0.25 -0.6 625,037 + AZOBR_RS02945 0.61 -0.4 625,037 + AZOBR_RS02945 0.61 -0.0 625,037 + AZOBR_RS02945 0.61 -0.3 625,163 + AZOBR_RS02945 0.67 +0.6 625,163 + AZOBR_RS02945 0.67 -0.0 625,164 - AZOBR_RS02945 0.68 +0.9 625,164 - AZOBR_RS02945 0.68 -0.9 625,232 + AZOBR_RS02945 0.71 +0.2 625,286 + AZOBR_RS02945 0.74 +0.6 625,286 + AZOBR_RS02945 0.74 +1.1 625,286 + AZOBR_RS02945 0.74 +0.9 625,286 + AZOBR_RS02945 0.74 -0.4 625,286 + AZOBR_RS02945 0.74 +0.7 625,287 - AZOBR_RS02945 0.74 -0.2 625,731 - -0.0 625,731 - +0.4 626,093 + AZOBR_RS02950 0.46 +0.0 626,096 + AZOBR_RS02950 0.47 +0.3 626,096 + AZOBR_RS02950 0.47 +0.3 626,096 + AZOBR_RS02950 0.47 +0.2 626,097 - AZOBR_RS02950 0.47 +0.1 626,190 - AZOBR_RS02950 0.66 -0.2 626,190 - AZOBR_RS02950 0.66 +0.1 626,193 - AZOBR_RS02950 0.67 -2.6 626,223 - AZOBR_RS02950 0.73 -0.1 626,295 - AZOBR_RS02950 0.88 -1.0 626,324 + -0.6 626,325 - -0.1 626,388 - +0.2
Or see this region's nucleotide sequence