Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02325 and AZOBR_RS02335 are separated by 985 nucleotides AZOBR_RS02335 and AZOBR_RS02340 are separated by 174 nucleotides AZOBR_RS02340 and AZOBR_RS02345 are separated by 170 nucleotides AZOBR_RS02345 and AZOBR_RS02350 are separated by 77 nucleotides
AZOBR_RS02325: AZOBR_RS02325 - ABC transporter substrate-binding protein, at 480,050 to 481,561
_RS02325
AZOBR_RS02335: AZOBR_RS02335 - peptide ABC transporter permease, at 482,547 to 483,407
_RS02335
AZOBR_RS02340: AZOBR_RS02340 - xanthine phosphoribosyltransferase, at 483,582 to 484,082
_RS02340
AZOBR_RS02345: AZOBR_RS02345 - tRNA-Arg, at 484,253 to 484,329
_RS02345
AZOBR_RS02350: AZOBR_RS02350 - hypothetical protein, at 484,407 to 484,586
_RS02350
Position (kb) 482
483
484 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 482.236 kb on + strand at 482.237 kb on - strand at 482.237 kb on - strand at 482.237 kb on - strand at 482.237 kb on - strand at 482.237 kb on - strand at 482.413 kb on + strand at 482.413 kb on + strand at 483.207 kb on + strand, within AZOBR_RS02335 at 483.207 kb on + strand, within AZOBR_RS02335 at 483.208 kb on - strand, within AZOBR_RS02335 at 483.208 kb on - strand, within AZOBR_RS02335 at 483.715 kb on + strand, within AZOBR_RS02340 at 483.877 kb on + strand, within AZOBR_RS02340 at 483.877 kb on + strand, within AZOBR_RS02340 at 484.116 kb on - strand at 484.117 kb on + strand at 484.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 482,236 + +0.6 482,237 - -0.0 482,237 - -0.2 482,237 - -0.8 482,237 - +0.6 482,237 - +0.2 482,413 + +0.0 482,413 + -0.6 483,207 + AZOBR_RS02335 0.77 -0.2 483,207 + AZOBR_RS02335 0.77 -3.0 483,208 - AZOBR_RS02335 0.77 +0.0 483,208 - AZOBR_RS02335 0.77 +0.2 483,715 + AZOBR_RS02340 0.27 -1.7 483,877 + AZOBR_RS02340 0.59 -2.7 483,877 + AZOBR_RS02340 0.59 -2.2 484,116 - -0.4 484,117 + -1.7 484,118 - -1.5
Or see this region's nucleotide sequence