Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000327 and ABIE53_000328 are separated by 64 nucleotides ABIE53_000328 and ABIE53_000329 are separated by 255 nucleotides ABIE53_000329 and ABIE53_000330 are separated by 105 nucleotides ABIE53_000330 and ABIE53_000331 are separated by 243 nucleotides
ABIE53_000327: ABIE53_000327 - hypothetical protein, at 346,431 to 346,721
_000327
ABIE53_000328: ABIE53_000328 - histidine triad (HIT) family protein, at 346,786 to 347,211
_000328
ABIE53_000329: ABIE53_000329 - hypothetical protein, at 347,467 to 347,799
_000329
ABIE53_000330: ABIE53_000330 - hypothetical protein, at 347,905 to 348,066
_000330
ABIE53_000331: ABIE53_000331 - integrase, at 348,310 to 349,521
_000331
Position (kb) 347
348 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 346.491 kb on + strand, within ABIE53_000327 at 346.492 kb on - strand, within ABIE53_000327 at 346.492 kb on - strand, within ABIE53_000327 at 346.492 kb on - strand, within ABIE53_000327 at 346.492 kb on - strand, within ABIE53_000327 at 346.506 kb on - strand, within ABIE53_000327 at 346.506 kb on - strand, within ABIE53_000327 at 346.558 kb on + strand, within ABIE53_000327 at 346.558 kb on + strand, within ABIE53_000327 at 346.558 kb on + strand, within ABIE53_000327 at 346.559 kb on - strand, within ABIE53_000327 at 346.559 kb on - strand, within ABIE53_000327 at 346.559 kb on - strand, within ABIE53_000327 at 346.717 kb on + strand at 346.717 kb on + strand at 346.718 kb on - strand at 346.718 kb on - strand at 346.719 kb on + strand at 346.719 kb on + strand at 346.719 kb on + strand at 346.720 kb on - strand at 346.720 kb on - strand at 346.720 kb on - strand at 346.720 kb on - strand at 346.720 kb on - strand at 346.720 kb on - strand at 346.720 kb on - strand at 346.761 kb on + strand at 346.762 kb on - strand at 346.762 kb on - strand at 346.762 kb on - strand at 346.960 kb on + strand, within ABIE53_000328 at 346.960 kb on + strand, within ABIE53_000328 at 346.960 kb on + strand, within ABIE53_000328 at 346.960 kb on + strand, within ABIE53_000328 at 346.961 kb on - strand, within ABIE53_000328 at 346.961 kb on - strand, within ABIE53_000328 at 346.961 kb on - strand, within ABIE53_000328 at 346.961 kb on - strand, within ABIE53_000328 at 346.961 kb on - strand, within ABIE53_000328 at 347.161 kb on + strand, within ABIE53_000328 at 347.161 kb on + strand, within ABIE53_000328 at 347.161 kb on + strand, within ABIE53_000328 at 347.161 kb on + strand, within ABIE53_000328 at 347.161 kb on + strand, within ABIE53_000328 at 347.161 kb on + strand, within ABIE53_000328 at 347.161 kb on + strand, within ABIE53_000328 at 347.162 kb on - strand, within ABIE53_000328 at 347.162 kb on - strand, within ABIE53_000328 at 347.162 kb on - strand, within ABIE53_000328 at 347.162 kb on - strand, within ABIE53_000328 at 347.162 kb on - strand, within ABIE53_000328 at 347.162 kb on - strand, within ABIE53_000328 at 347.162 kb on - strand, within ABIE53_000328 at 347.204 kb on + strand at 347.204 kb on + strand at 347.204 kb on + strand at 347.205 kb on - strand at 347.205 kb on - strand at 347.205 kb on - strand at 347.205 kb on - strand at 347.205 kb on - strand at 347.268 kb on + strand at 347.269 kb on - strand at 347.269 kb on - strand at 347.269 kb on - strand at 347.269 kb on - strand at 347.269 kb on - strand at 347.269 kb on - strand at 347.354 kb on + strand at 347.355 kb on - strand at 347.355 kb on - strand at 347.358 kb on + strand at 347.358 kb on + strand at 347.358 kb on + strand at 347.358 kb on + strand at 347.359 kb on - strand at 347.359 kb on - strand at 347.376 kb on + strand at 347.376 kb on + strand at 347.376 kb on + strand at 347.376 kb on + strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.377 kb on - strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.384 kb on + strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.385 kb on - strand at 347.396 kb on - strand at 347.411 kb on + strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.412 kb on - strand at 347.477 kb on + strand at 347.478 kb on - strand at 347.478 kb on - strand at 347.478 kb on - strand at 347.606 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.632 kb on + strand, within ABIE53_000329 at 347.633 kb on - strand, within ABIE53_000329 at 347.633 kb on - strand, within ABIE53_000329 at 347.633 kb on - strand, within ABIE53_000329 at 347.647 kb on + strand, within ABIE53_000329 at 347.648 kb on - strand, within ABIE53_000329 at 347.648 kb on - strand, within ABIE53_000329 at 347.677 kb on + strand, within ABIE53_000329 at 347.677 kb on + strand, within ABIE53_000329 at 347.677 kb on + strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.678 kb on - strand, within ABIE53_000329 at 347.695 kb on + strand, within ABIE53_000329 at 347.716 kb on + strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.717 kb on - strand, within ABIE53_000329 at 347.722 kb on + strand, within ABIE53_000329 at 347.722 kb on + strand, within ABIE53_000329 at 347.723 kb on - strand, within ABIE53_000329 at 347.723 kb on - strand, within ABIE53_000329 at 347.723 kb on - strand, within ABIE53_000329 at 347.723 kb on - strand, within ABIE53_000329 at 347.731 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.743 kb on + strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.744 kb on - strand, within ABIE53_000329 at 347.773 kb on + strand at 347.773 kb on + strand at 347.773 kb on + strand at 347.773 kb on + strand at 347.773 kb on + strand at 347.773 kb on + strand at 347.774 kb on - strand at 347.779 kb on + strand at 347.779 kb on + strand at 347.779 kb on + strand at 347.780 kb on - strand at 347.780 kb on - strand at 347.780 kb on - strand at 347.780 kb on - strand at 347.790 kb on + strand at 347.790 kb on + strand at 347.790 kb on + strand at 347.790 kb on + strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.791 kb on - strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.797 kb on + strand at 347.798 kb on - strand at 347.798 kb on - strand at 347.798 kb on - strand at 347.805 kb on - strand at 347.805 kb on - strand at 347.889 kb on + strand at 347.889 kb on + strand at 347.890 kb on - strand at 347.899 kb on + strand at 347.899 kb on + strand at 347.900 kb on - strand at 347.934 kb on - strand, within ABIE53_000330 at 347.985 kb on - strand, within ABIE53_000330 at 348.031 kb on - strand, within ABIE53_000330 at 348.044 kb on + strand, within ABIE53_000330 at 348.044 kb on + strand, within ABIE53_000330 at 348.044 kb on + strand, within ABIE53_000330 at 348.044 kb on + strand, within ABIE53_000330 at 348.045 kb on - strand, within ABIE53_000330 at 348.045 kb on - strand, within ABIE53_000330 at 348.045 kb on - strand, within ABIE53_000330 at 348.105 kb on + strand at 348.105 kb on + strand at 348.106 kb on - strand at 348.106 kb on - strand at 348.106 kb on - strand at 348.106 kb on - strand at 348.143 kb on + strand at 348.144 kb on - strand at 348.182 kb on + strand at 348.183 kb on - strand at 348.253 kb on + strand at 348.683 kb on + strand, within ABIE53_000331 at 348.684 kb on - strand, within ABIE53_000331 at 348.684 kb on - strand, within ABIE53_000331 at 348.684 kb on - strand, within ABIE53_000331
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 346,491 + ABIE53_000327 0.21 -0.2 346,492 - ABIE53_000327 0.21 -0.5 346,492 - ABIE53_000327 0.21 -1.5 346,492 - ABIE53_000327 0.21 -0.2 346,492 - ABIE53_000327 0.21 +1.7 346,506 - ABIE53_000327 0.26 +0.3 346,506 - ABIE53_000327 0.26 +0.1 346,558 + ABIE53_000327 0.44 -1.4 346,558 + ABIE53_000327 0.44 +1.2 346,558 + ABIE53_000327 0.44 +0.2 346,559 - ABIE53_000327 0.44 +0.1 346,559 - ABIE53_000327 0.44 +0.7 346,559 - ABIE53_000327 0.44 -0.1 346,717 + -0.9 346,717 + +0.2 346,718 - -0.7 346,718 - +0.4 346,719 + -0.1 346,719 + -0.8 346,719 + +0.7 346,720 - +0.3 346,720 - +0.4 346,720 - -0.7 346,720 - +0.1 346,720 - -0.0 346,720 - -0.4 346,720 - -1.8 346,761 + -0.6 346,762 - -1.8 346,762 - -1.3 346,762 - +0.6 346,960 + ABIE53_000328 0.41 -0.2 346,960 + ABIE53_000328 0.41 +2.1 346,960 + ABIE53_000328 0.41 -0.7 346,960 + ABIE53_000328 0.41 -0.0 346,961 - ABIE53_000328 0.41 -0.1 346,961 - ABIE53_000328 0.41 -0.8 346,961 - ABIE53_000328 0.41 -0.2 346,961 - ABIE53_000328 0.41 +0.7 346,961 - ABIE53_000328 0.41 +0.4 347,161 + ABIE53_000328 0.88 +0.1 347,161 + ABIE53_000328 0.88 -0.9 347,161 + ABIE53_000328 0.88 +0.1 347,161 + ABIE53_000328 0.88 +0.4 347,161 + ABIE53_000328 0.88 +1.2 347,161 + ABIE53_000328 0.88 -0.5 347,161 + ABIE53_000328 0.88 +0.1 347,162 - ABIE53_000328 0.88 -0.4 347,162 - ABIE53_000328 0.88 +0.2 347,162 - ABIE53_000328 0.88 -0.3 347,162 - ABIE53_000328 0.88 +0.4 347,162 - ABIE53_000328 0.88 -2.3 347,162 - ABIE53_000328 0.88 +0.3 347,162 - ABIE53_000328 0.88 -0.3 347,204 + -1.2 347,204 + -0.6 347,204 + +0.1 347,205 - -0.5 347,205 - -0.3 347,205 - -0.4 347,205 - -0.5 347,205 - -0.7 347,268 + +0.1 347,269 - +0.5 347,269 - -0.3 347,269 - +0.8 347,269 - -1.3 347,269 - -0.1 347,269 - -0.4 347,354 + +0.4 347,355 - -0.3 347,355 - +0.2 347,358 + -0.8 347,358 + -0.8 347,358 + +1.0 347,358 + +3.0 347,359 - -0.5 347,359 - -1.1 347,376 + +0.9 347,376 + -0.8 347,376 + -0.0 347,376 + +0.1 347,377 - -0.2 347,377 - -1.0 347,377 - -1.5 347,377 - +0.7 347,377 - -0.5 347,384 + +1.7 347,384 + +0.3 347,384 + +2.7 347,384 + -0.9 347,384 + +0.6 347,384 + -0.3 347,384 + -0.8 347,384 + -1.0 347,384 + +0.3 347,384 + +1.2 347,384 + +0.7 347,385 - -0.5 347,385 - -0.2 347,385 - +0.9 347,385 - -0.9 347,385 - +0.6 347,385 - -1.0 347,385 - -0.5 347,385 - -0.6 347,385 - +0.6 347,396 - -0.3 347,411 + -0.6 347,412 - +1.4 347,412 - +0.7 347,412 - -1.4 347,412 - -1.7 347,412 - +0.4 347,412 - -1.7 347,412 - -0.0 347,477 + -0.3 347,478 - +0.1 347,478 - +2.7 347,478 - +0.7 347,606 + ABIE53_000329 0.42 +0.1 347,632 + ABIE53_000329 0.50 +2.4 347,632 + ABIE53_000329 0.50 -1.2 347,632 + ABIE53_000329 0.50 -0.2 347,632 + ABIE53_000329 0.50 +1.7 347,632 + ABIE53_000329 0.50 +0.7 347,633 - ABIE53_000329 0.50 +1.7 347,633 - ABIE53_000329 0.50 -0.9 347,633 - ABIE53_000329 0.50 -0.7 347,647 + ABIE53_000329 0.54 -0.0 347,648 - ABIE53_000329 0.54 -0.7 347,648 - ABIE53_000329 0.54 -0.9 347,677 + ABIE53_000329 0.63 -0.5 347,677 + ABIE53_000329 0.63 +1.7 347,677 + ABIE53_000329 0.63 +0.0 347,678 - ABIE53_000329 0.63 -1.0 347,678 - ABIE53_000329 0.63 -1.0 347,678 - ABIE53_000329 0.63 -1.2 347,678 - ABIE53_000329 0.63 +0.8 347,695 + ABIE53_000329 0.68 -1.7 347,716 + ABIE53_000329 0.75 +1.2 347,717 - ABIE53_000329 0.75 +0.5 347,717 - ABIE53_000329 0.75 -0.2 347,717 - ABIE53_000329 0.75 +0.8 347,717 - ABIE53_000329 0.75 +0.1 347,722 + ABIE53_000329 0.77 -0.6 347,722 + ABIE53_000329 0.77 -0.0 347,723 - ABIE53_000329 0.77 -0.2 347,723 - ABIE53_000329 0.77 -1.0 347,723 - ABIE53_000329 0.77 +0.7 347,723 - ABIE53_000329 0.77 -2.0 347,731 + ABIE53_000329 0.79 +0.2 347,743 + ABIE53_000329 0.83 -0.0 347,743 + ABIE53_000329 0.83 -0.0 347,743 + ABIE53_000329 0.83 +0.0 347,743 + ABIE53_000329 0.83 +1.1 347,743 + ABIE53_000329 0.83 +0.1 347,743 + ABIE53_000329 0.83 +1.0 347,743 + ABIE53_000329 0.83 -0.3 347,744 - ABIE53_000329 0.83 +1.7 347,744 - ABIE53_000329 0.83 -0.6 347,744 - ABIE53_000329 0.83 -0.3 347,744 - ABIE53_000329 0.83 +0.1 347,744 - ABIE53_000329 0.83 -0.3 347,744 - ABIE53_000329 0.83 +0.1 347,744 - ABIE53_000329 0.83 +1.7 347,744 - ABIE53_000329 0.83 -0.4 347,744 - ABIE53_000329 0.83 -1.2 347,744 - ABIE53_000329 0.83 -0.9 347,773 + -0.1 347,773 + -0.5 347,773 + +0.1 347,773 + +1.1 347,773 + +0.1 347,773 + +0.4 347,774 - -1.3 347,779 + -1.8 347,779 + +0.1 347,779 + +0.7 347,780 - -0.0 347,780 - -0.2 347,780 - +0.1 347,780 - +0.1 347,790 + -0.3 347,790 + +0.3 347,790 + +0.0 347,790 + +0.5 347,791 - +0.2 347,791 - +0.7 347,791 - -0.3 347,791 - -0.0 347,791 - +0.2 347,791 - +1.7 347,791 - +2.9 347,797 + -0.2 347,797 + +2.7 347,797 + +0.3 347,797 + -0.2 347,797 + +0.6 347,797 + -0.9 347,798 - +0.2 347,798 - +0.1 347,798 - +0.1 347,805 - +0.6 347,805 - +0.1 347,889 + +0.2 347,889 + -0.6 347,890 - -1.0 347,899 + -0.1 347,899 + +0.6 347,900 - +0.4 347,934 - ABIE53_000330 0.18 -1.5 347,985 - ABIE53_000330 0.49 -0.2 348,031 - ABIE53_000330 0.78 -1.9 348,044 + ABIE53_000330 0.86 -1.0 348,044 + ABIE53_000330 0.86 -0.7 348,044 + ABIE53_000330 0.86 +0.3 348,044 + ABIE53_000330 0.86 -1.7 348,045 - ABIE53_000330 0.86 -0.4 348,045 - ABIE53_000330 0.86 -1.9 348,045 - ABIE53_000330 0.86 -0.5 348,105 + -0.5 348,105 + +0.8 348,106 - -1.0 348,106 - -0.3 348,106 - -0.2 348,106 - -0.9 348,143 + +2.7 348,144 - -2.2 348,182 + -1.7 348,183 - +2.0 348,253 + -0.2 348,683 + ABIE53_000331 0.31 +1.7 348,684 - ABIE53_000331 0.31 +0.1 348,684 - ABIE53_000331 0.31 -0.2 348,684 - ABIE53_000331 0.31 +0.2
Or see this region's nucleotide sequence